About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_023139-T1
OS493_023140-T1CBP/P300-RELATED
OS493_023141-T1
OS493_023142-T1
OS493_023143-T1
OS493_023144-T1
OS493_023145-T1
OS493_023146-T1
OS493_023147-T1
OS493_023148-T1
OS493_023149-T1
OS493_023150-T1
OS493_023151-T1
OS493_023152-T1
OS493_023153-T1
OS493_023154-T1
OS493_023155-T1
OS493_023156-T1
OS493_023157-T1RNA-SPLICING LIGASE RTCB
OS493_023158-T1RNA-SPLICING LIGASE RTCB
OS493_023159-T1D123 PROTEIN
OS493_023160-T1HOST CELL FACTOR
OS493_023161-T1HOST CELL FACTOR
OS493_023162-T1
OS493_023163-T1REGULATORY PROTEIN ZESTE
OS493_023164-T1OLIGOPHRENIN 1
OS493_023165-T1BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED
OS493_023166-T1
OS493_023167-T1MULTIPLE PDZ DOMAIN PROTEIN
OS493_023168-T1
OS493_023169-T1INNER MEMBRANE TRANSPORT PROTEIN YAJR
OS493_023171-T1
OS493_023172-T1
OS493_023173-T1
OS493_023174-T1
OS493_023175-T1
OS493_023176-T1KELCH PROTEIN
OS493_023177-T1METHYLMALONYL-COA MUTASE
OS493_023178-T1SERINE-THREONINE PROTEIN KINASE
OS493_023180-T1
OS493_023181-T1TELOMERASE RNA COMPONENT INTERACTING RNASE
OS493_023182-T1DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49
OS493_023183-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_023184-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_023185-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_023186-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_023187-T1
OS493_023188-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_023189-T1MOLTING PROTEIN MLT-4
OS493_023190-T1
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