About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_023086-T1TRANSCRIPTION FACTOR CP2
OS493_023087-T1FOLATE RECEPTOR
OS493_023088-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_023089-T1TETRATRICOPEPTIDE REPEAT PROTEIN 1
OS493_023090-T1LD24721P
OS493_023091-T1
OS493_023092-T1MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2
OS493_023093-T1MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2
OS493_023094-T1
OS493_023095-T1
OS493_023096-T1
OS493_023097-T1
OS493_023098-T1
OS493_023099-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_023100-T1MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2
OS493_023101-T1MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2
OS493_023102-T1
OS493_023103-T1
OS493_023104-T1SET AND MYND DOMAIN-CONTAINING PROTEIN 4
OS493_023105-T1MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2
OS493_023106-T1
OS493_023107-T1TPR REPEAT CONTAINING PROTEIN
OS493_023108-T1
OS493_023109-T1MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2
OS493_023110-T1MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2
OS493_023111-T1
OS493_023112-T1
OS493_023113-T1O-METHYLTRANSFERASE-RELATED
OS493_023114-T1
OS493_023115-T1
OS493_023116-T1
OS493_023117-T1MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
OS493_023118-T1DISULFIDE OXIDOREDUCTASE
OS493_023119-T1ENGULFMENT AND CELL MOTILITY
OS493_023120-T1
OS493_023121-T1
OS493_023122-T1RW1 PROTEIN HOMOLOG
OS493_023124-T1PALMITOYLTRANSFERASE ZDHHC16
OS493_023125-T1OPSIN
OS493_023126-T1OPSIN
OS493_023127-T1OPSIN
OS493_023129-T1CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT
OS493_023130-T1
OS493_023131-T1MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2
OS493_023132-T1BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED
OS493_023133-T1PROTEIN UNC-50 HOMOLOG
OS493_023135-T1
OS493_023136-T1
OS493_023137-T1JNK1/MAPK8-ASSOCIATED MEMBRANE PROTEIN
OS493_023138-T1
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