About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_023026-T1CYTOCHROME P450 FAMILY 46 SUBFAMILY A
OS493_023028-T1
OS493_023029-T1
OS493_023030-T1RNA POLYMERASE II-ASSOCIATED PROTEIN 3
OS493_023031-T1
OS493_023032-T1
OS493_023033-T1
OS493_023034-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA
OS493_023035-T1
OS493_023036-T1METHYLENETETRAHYDROFOLATE REDUCTASE
OS493_023037-T1METHYLENETETRAHYDROFOLATE REDUCTASE
OS493_023039-T1
OS493_023045-T1
OS493_023046-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_023047-T1LEUCOKININ RECEPTOR-RELATED
OS493_023048-T1MATRIX METALLOPROTEINASE
OS493_023049-T1MATRIX METALLOPROTEINASE
OS493_023050-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_023051-T1MATRIX METALLOPROTEINASE
OS493_023052-T1PROTEIN-TYROSINE SULFOTRANSFERASE 2
OS493_023053-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_023054-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_023055-T1
OS493_023056-T1OPSIN
OS493_023057-T1OPSIN
OS493_023058-T1OPSIN
OS493_023059-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_023060-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_023061-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_023062-T1LEUCOKININ RECEPTOR-RELATED
OS493_023063-T1
OS493_023064-T1
OS493_023065-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_023066-T1
OS493_023067-T1
OS493_023069-T1NUDIX HYDROLASE RELATED
OS493_023070-T1NUDIX HYDROLASE RELATED
OS493_023071-T1PYRROLINE-5-CARBOXYLATE REDUCTASE
OS493_023073-T1
OS493_023074-T1
OS493_023075-T1EXPRESSED PROTEIN
OS493_023076-T1
OS493_023077-T1MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2
OS493_023078-T1MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2
OS493_023079-T1SET AND MYND DOMAIN-CONTAINING PROTEIN 4
OS493_023080-T1
OS493_023081-T1TPR REPEAT CONTAINING PROTEIN
OS493_023082-T1
OS493_023084-T1SEC3/SYNTAXIN-RELATED
OS493_023085-T1SEC3/SYNTAXIN-RELATED
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