About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_022975-T15'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT
OS493_022976-T160S RIBOSOMAL PROTEIN L24
OS493_022977-T1
OS493_022978-T1
OS493_022979-T1UBIQUITIN THIOESTERASE
OS493_022980-T13-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN
OS493_022981-T1
OS493_022982-T1RAPSYN-RELATED
OS493_022983-T1RAPSYN-RELATED
OS493_022984-T1LD33695P
OS493_022985-T1
OS493_022986-T1RAPSYN-RELATED
OS493_022987-T1RAPSYN-RELATED
OS493_022988-T1RAPSYN-RELATED
OS493_022990-T1GASTRULATION DEFECTIVE PROTEIN 1-RELATED
OS493_022991-T1
OS493_022992-T1GASTRULATION DEFECTIVE PROTEIN 1-RELATED
OS493_022993-T1PHOSPHATIDYLINOSITOL KINASE
OS493_022994-T1
OS493_022995-T1MONOCARBOXYLATE TRANSPORTER
OS493_022996-T1
OS493_022997-T1NADH-CYTOCHROME B5 REDUCTASE
OS493_022998-T1CYTOCHROME B5 REDUCTASE 4 FAMILY MEMBER
OS493_022999-T1
OS493_023000-T1O-ACYLTRANSFERASE (WSD1-LIKE) FAMILY PROTEIN
OS493_023001-T1O-ACYLTRANSFERASE (WSD1-LIKE) FAMILY PROTEIN
OS493_023002-T1
OS493_023003-T1MONOCARBOXYLATE TRANSPORTER
OS493_023004-T1
OS493_023005-T1
OS493_023006-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
OS493_023007-T1
OS493_023008-T1
OS493_023009-T1
OS493_023010-T1
OS493_023011-T1
OS493_023012-T1
OS493_023013-T1E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER
OS493_023014-T1
OS493_023015-T1
OS493_023016-T1
OS493_023017-T1FLAVIN REDUCTASE (NADPH)
OS493_023018-T1FLAVIN REDUCTASE (NADPH)
OS493_023019-T1FLAVIN REDUCTASE (NADPH)
OS493_023020-T1
OS493_023021-T1
OS493_023022-T1
OS493_023023-T1DNA-BINDING PROTEIN SATB FAMILY MEMBER
OS493_023024-T1
OS493_023025-T1CYTOCHROME P450 FAMILY 46 SUBFAMILY A
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