Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_022975-T1 | 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT |
OS493_022976-T1 | 60S RIBOSOMAL PROTEIN L24 |
OS493_022977-T1 | |
OS493_022978-T1 | |
OS493_022979-T1 | UBIQUITIN THIOESTERASE |
OS493_022980-T1 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
OS493_022981-T1 | |
OS493_022982-T1 | RAPSYN-RELATED |
OS493_022983-T1 | RAPSYN-RELATED |
OS493_022984-T1 | LD33695P |
OS493_022985-T1 | |
OS493_022986-T1 | RAPSYN-RELATED |
OS493_022987-T1 | RAPSYN-RELATED |
OS493_022988-T1 | RAPSYN-RELATED |
OS493_022990-T1 | GASTRULATION DEFECTIVE PROTEIN 1-RELATED |
OS493_022991-T1 | |
OS493_022992-T1 | GASTRULATION DEFECTIVE PROTEIN 1-RELATED |
OS493_022993-T1 | PHOSPHATIDYLINOSITOL KINASE |
OS493_022994-T1 | |
OS493_022995-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_022996-T1 | |
OS493_022997-T1 | NADH-CYTOCHROME B5 REDUCTASE |
OS493_022998-T1 | CYTOCHROME B5 REDUCTASE 4 FAMILY MEMBER |
OS493_022999-T1 | |
OS493_023000-T1 | O-ACYLTRANSFERASE (WSD1-LIKE) FAMILY PROTEIN |
OS493_023001-T1 | O-ACYLTRANSFERASE (WSD1-LIKE) FAMILY PROTEIN |
OS493_023002-T1 | |
OS493_023003-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_023004-T1 | |
OS493_023005-T1 | |
OS493_023006-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
OS493_023007-T1 | |
OS493_023008-T1 | |
OS493_023009-T1 | |
OS493_023010-T1 | |
OS493_023011-T1 | |
OS493_023012-T1 | |
OS493_023013-T1 | E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER |
OS493_023014-T1 | |
OS493_023015-T1 | |
OS493_023016-T1 | |
OS493_023017-T1 | FLAVIN REDUCTASE (NADPH) |
OS493_023018-T1 | FLAVIN REDUCTASE (NADPH) |
OS493_023019-T1 | FLAVIN REDUCTASE (NADPH) |
OS493_023020-T1 | |
OS493_023021-T1 | |
OS493_023022-T1 | |
OS493_023023-T1 | DNA-BINDING PROTEIN SATB FAMILY MEMBER |
OS493_023024-T1 | |
OS493_023025-T1 | CYTOCHROME P450 FAMILY 46 SUBFAMILY A |