About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_022759-T1
OS493_022760-T1RABIN3-RELATED
OS493_022761-T1G PROTEIN-COUPLED RECEPTOR
OS493_022762-T1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
OS493_022763-T1GLUCOCORTICOID MODULATORY ELEMENT-BINDING PROTEIN
OS493_022764-T1
OS493_022765-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_022766-T1
OS493_022767-T1CADHERIN-23
OS493_022768-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
OS493_022769-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
OS493_022770-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
OS493_022771-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
OS493_022772-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
OS493_022773-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
OS493_022774-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
OS493_022775-T1
OS493_022776-T1
OS493_022777-T1PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B
OS493_022778-T1GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A, 7
OS493_022779-T1SOLUTE CARRIER FAMILY 17
OS493_022780-T1GLUTAMATE SEMIALDEHYDE DEHYDROGENASE
OS493_022782-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_022783-T1ZINC FINGER CCHC DOMAIN-CONTAINING
OS493_022784-T1TUDOR DOMAIN CONTAINING PROTEIN
OS493_022785-T1CHIMERIN FAMILY MEMBER
OS493_022786-T1
OS493_022788-T1ALLANTOICASE
OS493_022789-T1N-MYC DOWNSTREAM REGULATED
OS493_022790-T1N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE
OS493_022792-T1
OS493_022793-T1
OS493_022794-T1CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB
OS493_022795-T1E3 UBIQUITIN-PROTEIN LIGASE MARCH5
OS493_022796-T1ADENINE DNA GLYCOSYLASE
OS493_022797-T1
OS493_022798-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_022800-T1ODD-SKIPPED - RELATED
OS493_022801-T1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
OS493_022802-T1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
OS493_022803-T1REPETIN
OS493_022804-T1
OS493_022805-T1
OS493_022806-T1
OS493_022807-T1
OS493_022808-T1BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED
OS493_022809-T1BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED
OS493_022810-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_022811-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
OS493_022812-T1CYSTEINE-RICH SECRETORY PROTEIN-RELATED
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