About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_022533-T1PROLYL-TRNA SYNTHETASE
OS493_022535-T1
OS493_022536-T1PROLYL-TRNA SYNTHETASE
OS493_022537-T1PROLYL-TRNA SYNTHETASE
OS493_022538-T1PENTRAXIN
OS493_022539-T1
OS493_022540-T1PROTEIN SIDEKICK
OS493_022541-T1
OS493_022542-T1PROTEIN SIDEKICK
OS493_022543-T1CYTOKINE RECEPTOR
OS493_022544-T1DYNEIN LIGHT CHAIN ROADBLOCK
OS493_022545-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_022546-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_022547-T1ANKYRIN REPEAT PROTEIN
OS493_022549-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
OS493_022550-T1MULTICOPPER OXIDASE-RELATED
OS493_022551-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_022553-T1PROTEIN SIDEKICK
OS493_022554-T1PROTEIN SIDEKICK
OS493_022555-T1CYTOKINE RECEPTOR
OS493_022556-T1
OS493_022557-T1CYTOKINE RECEPTOR
OS493_022558-T1
OS493_022559-T1
OS493_022560-T1PROTEIN SIDEKICK
OS493_022561-T1
OS493_022562-T1DNA POLYMERASE ETA
OS493_022563-T1APOPTOSIS-STIMULATING OF P53 PROTEIN
OS493_022564-T1
OS493_022565-T1APOPTOSIS-STIMULATING OF P53 PROTEIN
OS493_022566-T1PRE-MRNA SPLICING FACTOR
OS493_022567-T1
OS493_022569-T1
OS493_022570-T1
OS493_022571-T1
OS493_022572-T1
OS493_022573-T1
OS493_022575-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_022576-T1CONTACTIN 5
OS493_022577-T1
OS493_022578-T1
OS493_022580-T1CONTACTIN 5
OS493_022581-T1
OS493_022582-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_022584-T1CYTOKINE RECEPTOR
OS493_022585-T1
OS493_022586-T1TITIN
OS493_022587-T1
OS493_022591-T1
OS493_022593-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
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