Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_022269-T1 | WD40 REPEAT PROTEIN |
OS493_022270-T1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
OS493_022271-T1 | MITOCHONDRIA-EATING PROTEIN-RELATED |
OS493_022272-T1 | PTB-CONTAINING, CUBILIN AND LRP1-INTERACTING PROTEIN |
OS493_022273-T1 | JITTERBUG, ISOFORM N |
OS493_022274-T1 | JITTERBUG, ISOFORM N |
OS493_022275-T1 | JITTERBUG, ISOFORM N |
OS493_022276-T1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
OS493_022277-T1 | PTB-CONTAINING, CUBILIN AND LRP1-INTERACTING PROTEIN |
OS493_022278-T1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
OS493_022279-T1 | ATP-DEPENDENT RNA HELICASE DBP3 |
OS493_022280-T1 | MISSHAPEN LIKE KINASE 1 |
OS493_022281-T1 | MISSHAPEN LIKE KINASE 1 |
OS493_022282-T1 | AGAP010540-PA |
OS493_022283-T1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
OS493_022284-T1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
OS493_022285-T1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3 |
OS493_022286-T1 | |
OS493_022287-T1 | PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1 |
OS493_022288-T1 | |
OS493_022289-T1 | UNCHARACTERIZED |
OS493_022290-T1 | |
OS493_022291-T1 | GLYPICAN |
OS493_022292-T1 | GLYPICAN |
OS493_022293-T1 | RHOMBOID PROTEASE |
OS493_022294-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_022295-T1 | GENE, 32742-RELATED-RELATED |
OS493_022296-T1 | GENE, 32742-RELATED-RELATED |
OS493_022297-T1 | |
OS493_022298-T1 | |
OS493_022300-T1 | NEPHRIN |
OS493_022301-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_022302-T1 | RNA BINDING MOTIF RBM PROTEIN -RELATED |
OS493_022303-T1 | WD REPEAT DOMAIN-CONTAINING FAMILY |
OS493_022304-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 12 |
OS493_022305-T1 | POLYCYSTIN-1 |
OS493_022306-T1 | POLYCYSTIN-1 |
OS493_022307-T1 | POLYCYSTIN-1 |
OS493_022308-T1 | POLYCYSTIN-1 |
OS493_022309-T1 | POLYCYSTIN-1 |
OS493_022310-T1 | |
OS493_022311-T1 | |
OS493_022312-T1 | |
OS493_022313-T1 | |
OS493_022314-T1 | |
OS493_022315-T1 | |
OS493_022316-T1 | UPF0764 PROTEIN C16ORF89 |
OS493_022317-T1 | |
OS493_022318-T1 | |
OS493_022319-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |