About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_022162-T1
OS493_022163-T1PEPTIDYLPROLYL ISOMERASE
OS493_022164-T1DIACYLGLYCEROL KINASE
OS493_022165-T1DIACYLGLYCEROL KINASE
OS493_022166-T1DIACYLGLYCEROL KINASE
OS493_022167-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_022170-T1
OS493_022171-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_022172-T1
OS493_022173-T1
OS493_022174-T1
OS493_022176-T1MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1
OS493_022177-T1E3 UBIQUITIN-PROTEIN LIGASE KCMF1
OS493_022178-T1
OS493_022179-T1
OS493_022180-T1
OS493_022181-T1SENTRIN/SUMO-SPECIFIC PROTEASE
OS493_022182-T1
OS493_022185-T1
OS493_022186-T1
OS493_022187-T1
OS493_022188-T1DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLOG SUPPRESSIN
OS493_022189-T1DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 HOMOLOG SUPPRESSIN
OS493_022190-T1AMINE OXIDASE
OS493_022191-T1
OS493_022192-T1
OS493_022193-T1
OS493_022194-T1
OS493_022195-T1
OS493_022196-T1AMINE OXIDASE
OS493_022197-T1
OS493_022198-T1LD33695P
OS493_022200-T1
OS493_022201-T1
OS493_022202-T1INTRAFLAGELLAR TRANSPORT PROTEIN 25 HOMOLOG
OS493_022203-T1
OS493_022204-T1
OS493_022205-T1
OS493_022206-T1METALLOPEPTIDASE M28 FAMILY MEMBER
OS493_022207-T1
OS493_022209-T1
OS493_022210-T1
OS493_022211-T1
OS493_022212-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_022213-T1
OS493_022214-T1RIBULOKINASE
OS493_022215-T1SPHINGOMYELIN PHOSPHODIESTERASE
OS493_022216-T1
OS493_022217-T1BAP28
OS493_022218-T1PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG
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