Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_022320-T1 | |
OS493_022321-T1 | |
OS493_022322-T1 | |
OS493_022323-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_022324-T1 | |
OS493_022325-T1 | INTEGRAL MEMBRANE PROTEIN GPR137 |
OS493_022326-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_022327-T1 | POLYCYSTIN-1 |
OS493_022328-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_022329-T1 | FIBRILLIN-RELATED |
OS493_022330-T1 | FIBRILLIN-RELATED |
OS493_022331-T1 | PEPTIDYLPROLYL ISOMERASE |
OS493_022332-T1 | HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1 |
OS493_022333-T1 | |
OS493_022334-T1 | CRANIOFACIAL DEVELOPMENT PROTEIN 1 |
OS493_022335-T1 | |
OS493_022336-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_022337-T1 | |
OS493_022338-T1 | |
OS493_022339-T1 | |
OS493_022340-T1 | |
OS493_022341-T1 | |
OS493_022342-T1 | PROTEASE FAMILY S9A OLIGOPEPTIDASE |
OS493_022343-T1 | |
OS493_022344-T1 | PROTEASE FAMILY S9A OLIGOPEPTIDASE |
OS493_022345-T1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED |
OS493_022346-T1 | |
OS493_022347-T1 | LD27203P-RELATED |
OS493_022348-T1 | |
OS493_022349-T1 | LD27203P-RELATED |
OS493_022350-T1 | |
OS493_022351-T1 | |
OS493_022352-T1 | |
OS493_022353-T1 | |
OS493_022354-T1 | GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT |
OS493_022355-T1 | SEMINAL PLASMA PROTEIN |
OS493_022356-T1 | SEMINAL PLASMA PROTEIN |
OS493_022357-T1 | TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 6 |
OS493_022358-T1 | ARPIN |
OS493_022359-T1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
OS493_022360-T1 | |
OS493_022362-T1 | CHAPERONIN |
OS493_022363-T1 | CHAPERONIN |
OS493_022364-T1 | CHAPERONIN |
OS493_022365-T1 | |
OS493_022366-T1 | SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE |
OS493_022367-T1 | UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL |
OS493_022368-T1 | COMM DOMAIN-CONTAINING PROTEIN 1 |
OS493_022369-T1 | UNCHARACTERIZED |
OS493_022370-T1 | N-ACETYLTRANSFERASE 6 |