About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_022101-T1UNCHARACTERIZED
OS493_022102-T1
OS493_022103-T1UNCHARACTERIZED
OS493_022104-T1SERINE/THREONINE-PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT 1-RELATED
OS493_022105-T1
OS493_022106-T1BONUS, ISOFORM C-RELATED
OS493_022107-T1SI:DKEY-97L20.6
OS493_022109-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_022111-T1
OS493_022112-T1
OS493_022113-T1
OS493_022114-T1SI:DKEY-97L20.6
OS493_022115-T1
OS493_022116-T1
OS493_022117-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_022118-T1SI:DKEY-97L20.6
OS493_022119-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_022121-T1
OS493_022123-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_022125-T1
OS493_022126-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_022127-T1
OS493_022128-T1
OS493_022129-T1
OS493_022130-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_022133-T1
OS493_022134-T1CXXC-TYPE ZINC FINGER PROTEIN 1
OS493_022135-T1
OS493_022136-T1MYOSIN
OS493_022138-T1
OS493_022139-T1MYOSIN
OS493_022140-T1AGAP011099-PA
OS493_022141-T1MYOSIN
OS493_022142-T1CXXC-TYPE ZINC FINGER PROTEIN 1
OS493_022144-T1TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
OS493_022145-T1
OS493_022146-T1
OS493_022147-T1
OS493_022149-T1
OS493_022150-T1IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
OS493_022151-T1
OS493_022152-T1AUTOSOMAL HIGHLY CONSERVED PROTEIN
OS493_022153-T1
OS493_022155-T1PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED
OS493_022156-T1
OS493_022157-T1THREE PRIME REPAIR EXONUCLEASE 1, 2
OS493_022158-T1SUPEROXIDE DISMUTASE CU-ZN -RELATED
OS493_022159-T1
OS493_022160-T1
OS493_022161-T1
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