Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_021939-T1 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
OS493_021940-T1 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
OS493_021941-T1 | |
OS493_021942-T1 | |
OS493_021943-T1 | RAB6A-GEF COMPLEX PARTNER PROTEIN 1 |
OS493_021944-T1 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
OS493_021945-T1 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
OS493_021946-T1 | ENHANCER OF MRNA-DECAPPING PROTEIN 4 |
OS493_021947-T1 | RAB6A-GEF COMPLEX PARTNER PROTEIN 1 |
OS493_021948-T1 | RAB6A-GEF COMPLEX PARTNER PROTEIN 1 |
OS493_021949-T1 | NUCLEOTIDE KINASE |
OS493_021950-T1 | METALLOENDOPEPTIDASE OMA1 |
OS493_021951-T1 | CASPASE ACTIVITY AND APOPTOSIS INHIBITOR 1 |
OS493_021952-T1 | CASPASE ACTIVITY AND APOPTOSIS INHIBITOR 1 |
OS493_021953-T1 | |
OS493_021954-T1 | |
OS493_021955-T1 | |
OS493_021956-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_021957-T1 | NARDILYSIN |
OS493_021958-T1 | |
OS493_021959-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
OS493_021960-T1 | TGF-BETA FAMILY |
OS493_021961-T1 | RAPSYN-RELATED |
OS493_021962-T1 | |
OS493_021963-T1 | RAPSYN-RELATED |
OS493_021964-T1 | UNCHARACTERIZED |
OS493_021965-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
OS493_021966-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_021968-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_021969-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_021970-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_021971-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_021972-T1 | PLASMINOGEN RECEPTOR (KT) |
OS493_021973-T1 | RIBOSOME BIOGENESIS PROTEIN BRIX |
OS493_021974-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED |
OS493_021975-T1 | PROTON CHANNEL OTOP |
OS493_021976-T1 | |
OS493_021977-T1 | LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD |
OS493_021978-T1 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
OS493_021980-T1 | |
OS493_021981-T1 | SNF2/RAD54 HELICASE FAMILY |
OS493_021982-T1 | SNF2/RAD54 HELICASE FAMILY |
OS493_021983-T1 | SNF2/RAD54 HELICASE FAMILY |
OS493_021984-T1 | FRIZZLED |
OS493_021985-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED |
OS493_021986-T1 | FRIZZLED |
OS493_021987-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED |
OS493_021988-T1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED |
OS493_021991-T1 | |
OS493_021992-T1 |