About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_008719-T1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42
OS493_008720-T1TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS
OS493_008722-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_008723-T1-
OS493_008725-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_008726-T1ATP-DEPENDENT RNA AND DNA HELICASE
OS493_008727-T1-
OS493_008728-T1ATP-DEPENDENT RNA AND DNA HELICASE
OS493_008729-T1RFX TRANSCRIPTION FACTOR FAMILY
OS493_008730-T1-
OS493_008731-T1-
OS493_008732-T1SH2 CONTAINING ADAPTOR PRAM-1 RELATED
OS493_008733-T1-
OS493_008734-T1-
OS493_008735-T1URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10
OS493_008737-T1LIPID PHOSPHATE PHOSPHATASE
OS493_008738-T1LIPID PHOSPHATE PHOSPHATASE
OS493_008739-T1LIPID PHOSPHATE PHOSPHATASE
OS493_008740-T1HISTONE H1
OS493_008741-T1PROTEIN EVA-1
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