About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_021273-T1COLLAGEN ALPHA
OS493_021276-T1PROPERDIN
OS493_021277-T1PROPERDIN
OS493_021278-T1ELONGATION FACTOR TU-RELATED
OS493_021279-T1
OS493_021280-T1CADHERIN-23
OS493_021281-T1GLUTATHIONE S-TRANSFERASE KAPPA
OS493_021282-T1RAS GTPASE-ACTIVATING PROTEINS
OS493_021283-T1RAS GTPASE-ACTIVATING PROTEINS
OS493_021284-T1
OS493_021285-T1
OS493_021286-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_021287-T1SI:CH211-201H21.5-RELATED
OS493_021288-T1SPECKLE-TYPE POZ PROTEIN
OS493_021289-T1RHO FAMILY GTPASE
OS493_021290-T1SI:CH211-201H21.5-RELATED
OS493_021291-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_021292-T1RMLC-LIKE JELLY ROLL FOLD PROTEIN
OS493_021293-T1FOIE GRAS
OS493_021294-T1FOIE GRAS
OS493_021295-T1
OS493_021296-T1TRAF-TYPE ZINC FINGER PROTEIN-RELATED
OS493_021297-T1
OS493_021298-T1NOTUM-RELATED
OS493_021299-T1ZINC METALLOPROTEINASE-RELATED
OS493_021300-T1RING FINGER 10 FAMILY MEMBER
OS493_021301-T1
OS493_021302-T1HEPATOCYTE NUCLEAR FACTOR 1
OS493_021303-T1SERINE INCORPORATOR
OS493_021304-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_021305-T1TRANSCRIPTION ELONGATION FACTOR SPT6
OS493_021306-T1TRANSCRIPTION ELONGATION FACTOR SPT6
OS493_021307-T1
OS493_021308-T1
OS493_021309-T1CITRATE LYASE SUBUNIT BETA-RELATED
OS493_021310-T1HISTONE-LYSINE N-METHYLTRANSFERASE SETD1
OS493_021311-T1HISTONE-LYSINE N-METHYLTRANSFERASE SETD1
OS493_021312-T1CLATHRIN HEAVY CHAIN RELATED
OS493_021313-T1NITRIC OXIDE SYNTHASE-RELATED
OS493_021314-T1
OS493_021315-T1STRAWBERRY NOTCH-RELATED
OS493_021316-T1
OS493_021317-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_021319-T1G-PROTEIN COUPLED RECEPTOR
OS493_021320-T1NEUROPEPTIDE Y RECEPTOR
OS493_021321-T1
OS493_021322-T1NIPSNAP-RELATED
OS493_021323-T1INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6
OS493_021324-T1TRNA (URACIL-5-)-METHYLTRANSFERASE
OS493_021326-T1TRNA (URACIL-5-)-METHYLTRANSFERASE
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