Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_021273-T1 | COLLAGEN ALPHA |
OS493_021276-T1 | PROPERDIN |
OS493_021277-T1 | PROPERDIN |
OS493_021278-T1 | ELONGATION FACTOR TU-RELATED |
OS493_021279-T1 | |
OS493_021280-T1 | CADHERIN-23 |
OS493_021281-T1 | GLUTATHIONE S-TRANSFERASE KAPPA |
OS493_021282-T1 | RAS GTPASE-ACTIVATING PROTEINS |
OS493_021283-T1 | RAS GTPASE-ACTIVATING PROTEINS |
OS493_021284-T1 | |
OS493_021285-T1 | |
OS493_021286-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_021287-T1 | SI:CH211-201H21.5-RELATED |
OS493_021288-T1 | SPECKLE-TYPE POZ PROTEIN |
OS493_021289-T1 | RHO FAMILY GTPASE |
OS493_021290-T1 | SI:CH211-201H21.5-RELATED |
OS493_021291-T1 | CUB DOMAIN-CONTAINING PROTEIN |
OS493_021292-T1 | RMLC-LIKE JELLY ROLL FOLD PROTEIN |
OS493_021293-T1 | FOIE GRAS |
OS493_021294-T1 | FOIE GRAS |
OS493_021295-T1 | |
OS493_021296-T1 | TRAF-TYPE ZINC FINGER PROTEIN-RELATED |
OS493_021297-T1 | |
OS493_021298-T1 | NOTUM-RELATED |
OS493_021299-T1 | ZINC METALLOPROTEINASE-RELATED |
OS493_021300-T1 | RING FINGER 10 FAMILY MEMBER |
OS493_021301-T1 | |
OS493_021302-T1 | HEPATOCYTE NUCLEAR FACTOR 1 |
OS493_021303-T1 | SERINE INCORPORATOR |
OS493_021304-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_021305-T1 | TRANSCRIPTION ELONGATION FACTOR SPT6 |
OS493_021306-T1 | TRANSCRIPTION ELONGATION FACTOR SPT6 |
OS493_021307-T1 | |
OS493_021308-T1 | |
OS493_021309-T1 | CITRATE LYASE SUBUNIT BETA-RELATED |
OS493_021310-T1 | HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 |
OS493_021311-T1 | HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 |
OS493_021312-T1 | CLATHRIN HEAVY CHAIN RELATED |
OS493_021313-T1 | NITRIC OXIDE SYNTHASE-RELATED |
OS493_021314-T1 | |
OS493_021315-T1 | STRAWBERRY NOTCH-RELATED |
OS493_021316-T1 | |
OS493_021317-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_021319-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_021320-T1 | NEUROPEPTIDE Y RECEPTOR |
OS493_021321-T1 | |
OS493_021322-T1 | NIPSNAP-RELATED |
OS493_021323-T1 | INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6 |
OS493_021324-T1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
OS493_021326-T1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |