Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_021113-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_021114-T1 | |
OS493_021115-T1 | REGULATOR-RELATED |
OS493_021116-T1 | |
OS493_021117-T1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE DSOR1-LIKE PROTEIN |
OS493_021118-T1 | HISTONE H1 |
OS493_021119-T1 | 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE |
OS493_021120-T1 | |
OS493_021121-T1 | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA |
OS493_021122-T1 | 60S RIBOSOMAL PROTEIN L17 |
OS493_021123-T1 | MULTIPLE PDZ DOMAIN PROTEIN |
OS493_021124-T1 | MULTIPLE PDZ DOMAIN PROTEIN |
OS493_021125-T1 | TRANS-GOLGI PROTEIN GMX33 |
OS493_021126-T1 | HOMER |
OS493_021127-T1 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
OS493_021128-T1 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
OS493_021129-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_021130-T1 | |
OS493_021131-T1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
OS493_021132-T1 | PROTEIN DISULFIDE ISOMERASE |
OS493_021133-T1 | RGM DOMAIN FAMILY MEMBER DRAG-1 |
OS493_021134-T1 | |
OS493_021135-T1 | |
OS493_021136-T1 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE |
OS493_021137-T1 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE |
OS493_021138-T1 | |
OS493_021139-T1 | PROTEIN DISULFIDE-ISOMERASE A6 |
OS493_021140-T1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
OS493_021141-T1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
OS493_021142-T1 | |
OS493_021143-T1 | |
OS493_021144-T1 | LD33804P |
OS493_021145-T1 | KELCH PROTEIN |
OS493_021146-T1 | |
OS493_021147-T1 | |
OS493_021148-T1 | |
OS493_021149-T1 | LD33804P |
OS493_021150-T1 | |
OS493_021151-T1 | KELCH PROTEIN |
OS493_021152-T1 | LD33804P |
OS493_021153-T1 | LD33804P |
OS493_021154-T1 | |
OS493_021155-T1 | LD33804P |
OS493_021156-T1 | |
OS493_021157-T1 | KELCH PROTEIN |
OS493_021158-T1 | |
OS493_021159-T1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
OS493_021160-T1 | KELCH PROTEIN |
OS493_021161-T1 | KELCH PROTEIN |
OS493_021162-T1 |