About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_021113-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_021114-T1
OS493_021115-T1REGULATOR-RELATED
OS493_021116-T1
OS493_021117-T1DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE DSOR1-LIKE PROTEIN
OS493_021118-T1HISTONE H1
OS493_021119-T16-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE
OS493_021120-T1
OS493_021121-T1FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA
OS493_021122-T160S RIBOSOMAL PROTEIN L17
OS493_021123-T1MULTIPLE PDZ DOMAIN PROTEIN
OS493_021124-T1MULTIPLE PDZ DOMAIN PROTEIN
OS493_021125-T1TRANS-GOLGI PROTEIN GMX33
OS493_021126-T1HOMER
OS493_021127-T1SODIUM/POTASSIUM/CALCIUM EXCHANGER
OS493_021128-T1SODIUM/POTASSIUM/CALCIUM EXCHANGER
OS493_021129-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_021130-T1
OS493_021131-T1CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
OS493_021132-T1PROTEIN DISULFIDE ISOMERASE
OS493_021133-T1RGM DOMAIN FAMILY MEMBER DRAG-1
OS493_021134-T1
OS493_021135-T1
OS493_021136-T1ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE
OS493_021137-T1ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE
OS493_021138-T1
OS493_021139-T1PROTEIN DISULFIDE-ISOMERASE A6
OS493_021140-T1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
OS493_021141-T1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
OS493_021142-T1
OS493_021143-T1
OS493_021144-T1LD33804P
OS493_021145-T1KELCH PROTEIN
OS493_021146-T1
OS493_021147-T1
OS493_021148-T1
OS493_021149-T1LD33804P
OS493_021150-T1
OS493_021151-T1KELCH PROTEIN
OS493_021152-T1LD33804P
OS493_021153-T1LD33804P
OS493_021154-T1
OS493_021155-T1LD33804P
OS493_021156-T1
OS493_021157-T1KELCH PROTEIN
OS493_021158-T1
OS493_021159-T1KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED
OS493_021160-T1KELCH PROTEIN
OS493_021161-T1KELCH PROTEIN
OS493_021162-T1
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