About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_020856-T1
OS493_020857-T1
OS493_020859-T1TRANSPOSABLE ELEMENT-RELATED
OS493_020860-T1
OS493_020861-T1HEAT SHOCK REGULATED 2
OS493_020862-T1P25 ALPHA-RELATED
OS493_020863-T1SOLUBLE NSF ATTACHMENT PROTEIN SNAP
OS493_020864-T1FAT ATYPICAL CADHERIN-RELATED
OS493_020865-T1WW DOMAIN BINDING PROTEIN 2, ISOFORM E
OS493_020866-T1
OS493_020867-T1
OS493_020868-T1
OS493_020869-T1OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
OS493_020870-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_020871-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_020872-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_020873-T1ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2
OS493_020874-T1
OS493_020875-T1ZINC FINGER PROTEIN ZIC AND GLI
OS493_020876-T1COLLAGEN ALPHA
OS493_020877-T1
OS493_020878-T1
OS493_020879-T1
OS493_020880-T1SYNAPTOGYRIN
OS493_020881-T1EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
OS493_020882-T1
OS493_020883-T1ALPHA-PROTEIN KINASE 1
OS493_020884-T1ALPHA-PROTEIN KINASE 1
OS493_020885-T1
OS493_020886-T1EPSIN/ENT-RELATED
OS493_020887-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
OS493_020888-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
OS493_020889-T1ZINC FINGER AND BTB DOMAIN-CONTAINING
OS493_020891-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
OS493_020892-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
OS493_020893-T1
OS493_020894-T1
OS493_020895-T1CHROMOSOME 16 OPEN READING FRAME 96
OS493_020896-T1THIOREDOXIN DOMAIN-CONTAINING PROTEIN 11
OS493_020897-T1THIOREDOXIN DOMAIN-CONTAINING PROTEIN 11
OS493_020899-T112 KDA HEAT SHOCK PROTEIN
OS493_020900-T1EXPRESSED PROTEIN
OS493_020902-T1ACYL CARRIER PROTEIN
OS493_020903-T1
OS493_020904-T1
OS493_020905-T1
OS493_020907-T1
OS493_020908-T1E3 UBIQUITIN-PROTEIN LIGASE UBR5
OS493_020909-T1E3 UBIQUITIN-PROTEIN LIGASE UBR5
OS493_020910-T1
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