About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_020588-T1
OS493_020589-T1SPHINGOMYELIN PHOSPHODIESTERASE 4
OS493_020590-T1SPHINGOMYELIN PHOSPHODIESTERASE 4
OS493_020592-T1GLYCOSYLTRANSFERASE-RELATED
OS493_020593-T1SET AND MYND DOMAIN-CONTAINING PROTEIN 4
OS493_020595-T1
OS493_020596-T12,5-DIKETO-D-GLUCONIC ACID REDUCTASE
OS493_020597-T1UNCHARACTERIZED
OS493_020598-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_020599-T1CALPAIN-7
OS493_020600-T1FOLLISTATIN-RELATED
OS493_020601-T1FIBROBLAST GROWTH FACTOR
OS493_020602-T1FIBROBLAST GROWTH FACTOR
OS493_020603-T1ALPHA-MANNOSIDASE
OS493_020604-T1WD40 REPEAT PROTEIN 12, 37
OS493_020605-T1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
OS493_020606-T1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
OS493_020607-T1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
OS493_020608-T1ATP-CITRATE SYNTHASE
OS493_020609-T1BNAA05G37250D PROTEIN
OS493_020610-T1
OS493_020611-T1HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
OS493_020612-T1SERINE/THREONINE-PROTEIN KINASE 17
OS493_020613-T1ANNEXIN
OS493_020614-T1
OS493_020615-T1
OS493_020616-T1CADHERIN-23
OS493_020617-T1CYTOCHROME P450 FAMILY 3
OS493_020618-T1CYTOCHROME P450 FAMILY 3
OS493_020619-T1CYTOCHROME P450 FAMILY 3
OS493_020620-T1CYTOCHROME P450 FAMILY 3
OS493_020621-T1TUMOR ENDOTHELIAL MARKER 7 RELATED
OS493_020622-T1TUMOR ENDOTHELIAL MARKER 7 RELATED
OS493_020623-T1
OS493_020624-T1TATD FAMILY DEOXYRIBONUCLEASE
OS493_020626-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_020629-T1ASPARTYL PROTEASE-RELATED
OS493_020631-T1BTB/POZ DOMAIN-CONTAINING
OS493_020632-T1
OS493_020633-T1CDC42 SMALL EFFECTOR PROTEIN HOMOLOG
OS493_020634-T1
OS493_020636-T1CHONDROITIN SYNTHASE
OS493_020637-T1
OS493_020638-T1
OS493_020639-T1
OS493_020640-T1RAD25/XP-B DNA REPAIR HELICASE
OS493_020641-T1RAD25/XP-B DNA REPAIR HELICASE
OS493_020642-T1FOLATE RECEPTOR
OS493_020643-T1
OS493_020645-T1AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT
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