Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_020588-T1 | |
OS493_020589-T1 | SPHINGOMYELIN PHOSPHODIESTERASE 4 |
OS493_020590-T1 | SPHINGOMYELIN PHOSPHODIESTERASE 4 |
OS493_020592-T1 | GLYCOSYLTRANSFERASE-RELATED |
OS493_020593-T1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
OS493_020595-T1 | |
OS493_020596-T1 | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE |
OS493_020597-T1 | UNCHARACTERIZED |
OS493_020598-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_020599-T1 | CALPAIN-7 |
OS493_020600-T1 | FOLLISTATIN-RELATED |
OS493_020601-T1 | FIBROBLAST GROWTH FACTOR |
OS493_020602-T1 | FIBROBLAST GROWTH FACTOR |
OS493_020603-T1 | ALPHA-MANNOSIDASE |
OS493_020604-T1 | WD40 REPEAT PROTEIN 12, 37 |
OS493_020605-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_020606-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_020607-T1 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
OS493_020608-T1 | ATP-CITRATE SYNTHASE |
OS493_020609-T1 | BNAA05G37250D PROTEIN |
OS493_020610-T1 | |
OS493_020611-T1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
OS493_020612-T1 | SERINE/THREONINE-PROTEIN KINASE 17 |
OS493_020613-T1 | ANNEXIN |
OS493_020614-T1 | |
OS493_020615-T1 | |
OS493_020616-T1 | CADHERIN-23 |
OS493_020617-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_020618-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_020619-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_020620-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_020621-T1 | TUMOR ENDOTHELIAL MARKER 7 RELATED |
OS493_020622-T1 | TUMOR ENDOTHELIAL MARKER 7 RELATED |
OS493_020623-T1 | |
OS493_020624-T1 | TATD FAMILY DEOXYRIBONUCLEASE |
OS493_020626-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_020629-T1 | ASPARTYL PROTEASE-RELATED |
OS493_020631-T1 | BTB/POZ DOMAIN-CONTAINING |
OS493_020632-T1 | |
OS493_020633-T1 | CDC42 SMALL EFFECTOR PROTEIN HOMOLOG |
OS493_020634-T1 | |
OS493_020636-T1 | CHONDROITIN SYNTHASE |
OS493_020637-T1 | |
OS493_020638-T1 | |
OS493_020639-T1 | |
OS493_020640-T1 | RAD25/XP-B DNA REPAIR HELICASE |
OS493_020641-T1 | RAD25/XP-B DNA REPAIR HELICASE |
OS493_020642-T1 | FOLATE RECEPTOR |
OS493_020643-T1 | |
OS493_020645-T1 | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT |