Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_020318-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
OS493_020319-T1 | SORTING NEXIN-29-RELATED |
OS493_020321-T1 | |
OS493_020322-T1 | GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN |
OS493_020324-T1 | GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN |
OS493_020325-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
OS493_020326-T1 | |
OS493_020327-T1 | |
OS493_020328-T1 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
OS493_020329-T1 | GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2 |
OS493_020330-T1 | |
OS493_020331-T1 | |
OS493_020332-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_020333-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_020334-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_020335-T1 | LD09343P |
OS493_020336-T1 | F-BOX ONLY PROTEIN 22 |
OS493_020337-T1 | |
OS493_020338-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_020339-T1 | POLYCYSTIN-1 |
OS493_020340-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_020341-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_020344-T1 | POLYCYSTIN-1 |
OS493_020345-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_020346-T1 | SERINE/THREONINE-PROTEIN KINASE |
OS493_020347-T1 | SUPERNUMERARY LIMBS, ISOFORM B-RELATED |
OS493_020348-T1 | TGF-BETA FAMILY |
OS493_020349-T1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
OS493_020350-T1 | |
OS493_020352-T1 | - |
OS493_020353-T1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
OS493_020354-T1 | |
OS493_020355-T1 | |
OS493_020356-T1 | ENHANCER OF RUDIMENTARY ERH |
OS493_020357-T1 | PHOSPHOLIPASE B, PLB1 |
OS493_020358-T1 | IM:7138239 |
OS493_020359-T1 | TGF-BETA FAMILY |
OS493_020360-T1 | IM:7138239 |
OS493_020361-T1 | FIBROBLAST GROWTH FACTOR |
OS493_020362-T1 | DRAB11-RELATED |
OS493_020363-T1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
OS493_020364-T1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
OS493_020365-T1 | RAS-RELATED PROTEIN RAB |
OS493_020366-T1 | ADIPOR/PROGESTIN RECEPTOR-RELATED |
OS493_020367-T1 | |
OS493_020368-T1 | ANOCTAMIN |
OS493_020369-T1 | |
OS493_020370-T1 | |
OS493_020371-T1 | SPLICING FACTOR SF3A-RELATED |
OS493_020372-T1 | SPLICING FACTOR SF3A-RELATED |