About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_020318-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_020319-T1SORTING NEXIN-29-RELATED
OS493_020321-T1
OS493_020322-T1GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN
OS493_020324-T1GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN
OS493_020325-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_020326-T1
OS493_020327-T1
OS493_020328-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
OS493_020329-T1GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2
OS493_020330-T1
OS493_020331-T1
OS493_020332-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_020333-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_020334-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_020335-T1LD09343P
OS493_020336-T1F-BOX ONLY PROTEIN 22
OS493_020337-T1
OS493_020338-T1MULTICOPPER OXIDASE-RELATED
OS493_020339-T1POLYCYSTIN-1
OS493_020340-T1POLYCYSTIN FAMILY MEMBER
OS493_020341-T1POLYCYSTIN FAMILY MEMBER
OS493_020344-T1POLYCYSTIN-1
OS493_020345-T1POLYCYSTIN FAMILY MEMBER
OS493_020346-T1SERINE/THREONINE-PROTEIN KINASE
OS493_020347-T1SUPERNUMERARY LIMBS, ISOFORM B-RELATED
OS493_020348-T1TGF-BETA FAMILY
OS493_020349-T1ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
OS493_020350-T1
OS493_020352-T1-
OS493_020353-T1HEAT SHOCK PROTEIN HSP-12.2-RELATED
OS493_020354-T1
OS493_020355-T1
OS493_020356-T1ENHANCER OF RUDIMENTARY ERH
OS493_020357-T1PHOSPHOLIPASE B, PLB1
OS493_020358-T1IM:7138239
OS493_020359-T1TGF-BETA FAMILY
OS493_020360-T1IM:7138239
OS493_020361-T1FIBROBLAST GROWTH FACTOR
OS493_020362-T1DRAB11-RELATED
OS493_020363-T1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
OS493_020364-T1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
OS493_020365-T1RAS-RELATED PROTEIN RAB
OS493_020366-T1ADIPOR/PROGESTIN RECEPTOR-RELATED
OS493_020367-T1
OS493_020368-T1ANOCTAMIN
OS493_020369-T1
OS493_020370-T1
OS493_020371-T1SPLICING FACTOR SF3A-RELATED
OS493_020372-T1SPLICING FACTOR SF3A-RELATED
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