Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_020262-T1 | |
OS493_020263-T1 | DNA2/NAM7 HELICASE FAMILY |
OS493_020264-T1 | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED |
OS493_020265-T1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
OS493_020266-T1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
OS493_020267-T1 | GEO13361P1-RELATED |
OS493_020268-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_020269-T1 | NUCLEAR PROTEIN SKIP-RELATED |
OS493_020270-T1 | NUCLEAR PROTEIN SKIP-RELATED |
OS493_020271-T1 | TYROSINASE FAMILY MEMBER |
OS493_020272-T1 | TYROSINASE FAMILY MEMBER |
OS493_020275-T1 | TYROSINASE FAMILY MEMBER |
OS493_020276-T1 | TYROSINASE FAMILY MEMBER |
OS493_020277-T1 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
OS493_020278-T1 | |
OS493_020279-T1 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
OS493_020280-T1 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
OS493_020281-T1 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
OS493_020282-T1 | RETICULON-LIKE PROTEIN |
OS493_020283-T1 | PROTEIN KINASE C, MU |
OS493_020284-T1 | |
OS493_020286-T1 | |
OS493_020287-T1 | |
OS493_020288-T1 | |
OS493_020289-T1 | SERINE/THREONINE-PROTEIN KINASE NEK |
OS493_020290-T1 | LEUCINE-RICH REPEAT-CONTAINING |
OS493_020291-T1 | |
OS493_020292-T1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
OS493_020293-T1 | TYROSYL-DNA PHOSPHODIESTERASE 1 |
OS493_020294-T1 | TYROSYL-DNA PHOSPHODIESTERASE 1 |
OS493_020295-T1 | TYROSYL-DNA PHOSPHODIESTERASE 1 |
OS493_020296-T1 | |
OS493_020297-T1 | DEFECTIVE SPERMATOGENESIS PROTEIN 39 |
OS493_020298-T1 | |
OS493_020299-T1 | |
OS493_020300-T1 | STRIATIN |
OS493_020301-T1 | STRIATIN |
OS493_020302-T1 | CARBONIC ANHYDRASE |
OS493_020304-T1 | CARBONIC ANHYDRASE |
OS493_020305-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_020307-T1 | PROPERDIN |
OS493_020308-T1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
OS493_020309-T1 | TRANSMEMBRANE PROTEIN 246 |
OS493_020310-T1 | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY |
OS493_020311-T1 | |
OS493_020312-T1 | SERINE PROTEASE |
OS493_020313-T1 | OS07G0633600 PROTEIN |
OS493_020315-T1 | |
OS493_020316-T1 | |
OS493_020317-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |