Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_020373-T1 | MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN |
OS493_020374-T1 | |
OS493_020375-T1 | |
OS493_020376-T1 | |
OS493_020377-T1 | |
OS493_020378-T1 | KELCH REPEAT DOMAIN |
OS493_020379-T1 | |
OS493_020380-T1 | E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED |
OS493_020381-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP3 |
OS493_020382-T1 | SERINE/THREONINE/TYROSINE-INTERACTING PROTEIN |
OS493_020383-T1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
OS493_020384-T1 | |
OS493_020385-T1 | GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN |
OS493_020387-T1 | GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN |
OS493_020390-T1 | GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN |
OS493_020392-T1 | |
OS493_020393-T1 | PROTEIN SIDEKICK |
OS493_020394-T1 | UROPORPHYRINOGEN III SYNTHASE |
OS493_020395-T1 | ZGC:174356 |
OS493_020396-T1 | ACROSIN-RELATED |
OS493_020397-T1 | PROPERDIN |
OS493_020398-T1 | HEAT SHOCK PROTEIN 70KDA |
OS493_020399-T1 | ANTERIOR GRADIENT PROTEIN-RELATED |
OS493_020400-T1 | PROTEIN ABHD14B-LIKE |
OS493_020401-T1 | PROTEIN ABHD14B-LIKE |
OS493_020402-T1 | SOX TRANSCRIPTION FACTOR |
OS493_020403-T1 | PROTEIN SIDEKICK |
OS493_020404-T1 | DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN |
OS493_020405-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_020406-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_020407-T1 | |
OS493_020408-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_020409-T1 | HEPARANASE |
OS493_020410-T1 | HEPARANASE |
OS493_020411-T1 | HEPARANASE |
OS493_020412-T1 | BRIDGING INTEGRATOR 3 |
OS493_020413-T1 | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED |
OS493_020414-T1 | |
OS493_020415-T1 | |
OS493_020416-T1 | |
OS493_020417-T1 | |
OS493_020418-T1 | |
OS493_020419-T1 | |
OS493_020420-T1 | |
OS493_020421-T1 | |
OS493_020422-T1 | ZGC:195170 |
OS493_020423-T1 | |
OS493_020424-T1 | PROLINE-RICH, LACRIMAL 1 |
OS493_020425-T1 | |
OS493_020426-T1 |