About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_020373-T1MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
OS493_020374-T1
OS493_020375-T1
OS493_020376-T1
OS493_020377-T1
OS493_020378-T1KELCH REPEAT DOMAIN
OS493_020379-T1
OS493_020380-T1E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED
OS493_020381-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP3
OS493_020382-T1SERINE/THREONINE/TYROSINE-INTERACTING PROTEIN
OS493_020383-T1HEAT SHOCK PROTEIN HSP-12.2-RELATED
OS493_020384-T1
OS493_020385-T1GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN
OS493_020387-T1GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN
OS493_020390-T1GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN
OS493_020392-T1
OS493_020393-T1PROTEIN SIDEKICK
OS493_020394-T1UROPORPHYRINOGEN III SYNTHASE
OS493_020395-T1ZGC:174356
OS493_020396-T1ACROSIN-RELATED
OS493_020397-T1PROPERDIN
OS493_020398-T1HEAT SHOCK PROTEIN 70KDA
OS493_020399-T1ANTERIOR GRADIENT PROTEIN-RELATED
OS493_020400-T1PROTEIN ABHD14B-LIKE
OS493_020401-T1PROTEIN ABHD14B-LIKE
OS493_020402-T1SOX TRANSCRIPTION FACTOR
OS493_020403-T1PROTEIN SIDEKICK
OS493_020404-T1DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN
OS493_020405-T1ATP-DEPENDENT RNA HELICASE
OS493_020406-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_020407-T1
OS493_020408-T1PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
OS493_020409-T1HEPARANASE
OS493_020410-T1HEPARANASE
OS493_020411-T1HEPARANASE
OS493_020412-T1BRIDGING INTEGRATOR 3
OS493_020413-T1TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED
OS493_020414-T1
OS493_020415-T1
OS493_020416-T1
OS493_020417-T1
OS493_020418-T1
OS493_020419-T1
OS493_020420-T1
OS493_020421-T1
OS493_020422-T1ZGC:195170
OS493_020423-T1
OS493_020424-T1PROLINE-RICH, LACRIMAL 1
OS493_020425-T1
OS493_020426-T1
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