About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_020038-T1
OS493_020039-T1
OS493_020040-T1IKB KINASE
OS493_020041-T1EXPORTIN-T/LOS1
OS493_020042-T1EXPORTIN-T/LOS1
OS493_020043-T1RAB GDP-DISSOCIATION INHIBITOR
OS493_020044-T1RAB GDP-DISSOCIATION INHIBITOR
OS493_020045-T1
OS493_020046-T1
OS493_020047-T1
OS493_020048-T1HEDGEHOG
OS493_020049-T1CARBON CATABOLITE REPRESSOR PROTEIN 4
OS493_020051-T1
OS493_020054-T1
OS493_020055-T1
OS493_020057-T1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
OS493_020058-T1NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSED
OS493_020059-T1
OS493_020060-T1OTU DOMAIN CONTAINING PROTEIN
OS493_020061-T1
OS493_020062-T1
OS493_020063-T1RHO FAMILY GTPASE
OS493_020064-T1RHO FAMILY GTPASE
OS493_020065-T1RHO FAMILY GTPASE
OS493_020066-T1RHO FAMILY GTPASE
OS493_020067-T1RHO FAMILY GTPASE
OS493_020068-T1RHO FAMILY GTPASE
OS493_020069-T1RHO FAMILY GTPASE
OS493_020070-T1RHO FAMILY GTPASE
OS493_020071-T1RHO FAMILY GTPASE
OS493_020073-T1METALLOPROTEASE
OS493_020074-T1PROTEASOME SUBUNIT ALPHA/BETA
OS493_020075-T1
OS493_020076-T1N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D
OS493_020077-T1
OS493_020078-T1
OS493_020079-T1
OS493_020080-T1
OS493_020081-T1
OS493_020082-T1
OS493_020083-T1
OS493_020084-T1N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D
OS493_020086-T1
OS493_020088-T1
OS493_020089-T1
OS493_020090-T1SOLUTE CARRIER FAMILY 39
OS493_020091-T1MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED
OS493_020094-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_020095-T1
OS493_020096-T1SMARCE1 REGULATOR OF CHROMATIN
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