About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_019876-T1
OS493_019877-T1
OS493_019878-T1
OS493_019879-T1
OS493_019880-T1
OS493_019881-T1
OS493_019882-T1
OS493_019883-T1CADHERIN-23
OS493_019884-T1FAT ATYPICAL CADHERIN-RELATED
OS493_019885-T1CADHERIN-87A
OS493_019886-T1CADHERIN-87A
OS493_019887-T1CADHERIN-23
OS493_019888-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_019889-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_019890-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_019891-T1AT29763P-RELATED
OS493_019892-T1
OS493_019893-T1
OS493_019894-T1
OS493_019895-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
OS493_019896-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
OS493_019897-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_019900-T1TRANSDUCIN BETA-LIKE 3
OS493_019901-T1TRANSDUCIN BETA-LIKE 3
OS493_019902-T1
OS493_019903-T1TRANSDUCIN BETA-LIKE 3
OS493_019904-T1MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
OS493_019905-T1MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
OS493_019906-T1
OS493_019907-T1MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
OS493_019908-T1
OS493_019909-T1
OS493_019910-T1
OS493_019911-T1UNCHARACTERIZED
OS493_019912-T1
OS493_019913-T1
OS493_019914-T1
OS493_019915-T1
OS493_019916-T1
OS493_019917-T1
OS493_019918-T1
OS493_019919-T1
OS493_019920-T1
OS493_019921-T1
OS493_019922-T1
OS493_019923-T1
OS493_019924-T1
OS493_019925-T1
OS493_019926-T1
OS493_019927-T1
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