About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_019558-T1
OS493_019559-T1
OS493_019560-T1
OS493_019561-T1ZGC:195170
OS493_019562-T1
OS493_019563-T1-
OS493_019564-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_019565-T1LEUCINE-RICH REPEAT-CONTAINING
OS493_019566-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_019567-T1LEUCINE-RICH REPEAT-CONTAINING
OS493_019568-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_019570-T1
OS493_019571-T1
OS493_019572-T1-
OS493_019573-T1
OS493_019574-T1
OS493_019575-T1DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS
OS493_019576-T1PETER PAN-RELATED
OS493_019577-T1FLOTILLIN-RELATED
OS493_019578-T1RIBOSOMAL PROTEIN S7
OS493_019579-T1GLYCOGENIN SUBFAMILY MEMBER
OS493_019580-T1GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT
OS493_019581-T1IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H
OS493_019582-T1ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL
OS493_019583-T1PROTEIN-TYROSINE SULFOTRANSFERASE 2
OS493_019584-T1PROTEIN-TYROSINE SULFOTRANSFERASE 2
OS493_019585-T1CREB-REGULATED TRANSCRIPTION COACTIVATOR
OS493_019586-T1CREB-REGULATED TRANSCRIPTION COACTIVATOR
OS493_019587-T1
OS493_019588-T1
OS493_019589-T1CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 1
OS493_019590-T1RING FINGER AND KH DOMAIN CONTAINING PROTEIN 1
OS493_019591-T1
OS493_019592-T1CYCLIN
OS493_019593-T1
OS493_019594-T1
OS493_019598-T1
OS493_019599-T1
OS493_019600-T1
OS493_019601-T1
OS493_019602-T1
OS493_019603-T1APONTIC
OS493_019604-T1E3 UBIQUITIN-PROTEIN LIGASE UBR5
OS493_019605-T1E3 UBIQUITIN-PROTEIN LIGASE UBR5
OS493_019606-T1E3 UBIQUITIN-PROTEIN LIGASE UBR5
OS493_019607-T1SOLUTE CARRIER FAMILY 25
OS493_019608-T1MORN REPEAT-CONTAINING PROTEIN 2
OS493_019609-T1E3 UBIQUITIN-PROTEIN LIGASE UBR5
OS493_019610-T1E3 UBIQUITIN-PROTEIN LIGASE UBR5
OS493_019611-T1E3 UBIQUITIN-PROTEIN LIGASE UBR5
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