Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_019505-T1 | FRIZZLED |
OS493_019506-T1 | CENTROSOMAL PROTEIN OF 44 KDA |
OS493_019507-T1 | TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 |
OS493_019508-T1 | |
OS493_019509-T1 | LIPOXYGENASE |
OS493_019510-T1 | |
OS493_019511-T1 | |
OS493_019512-T1 | |
OS493_019513-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
OS493_019514-T1 | |
OS493_019515-T1 | |
OS493_019516-T1 | |
OS493_019517-T1 | HCLS1-BINDING PROTEIN 3 |
OS493_019518-T1 | MYOTUBULARIN-RELATED |
OS493_019519-T1 | UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX ASSEMBLY FACTOR 2 |
OS493_019520-T1 | ANKYRIN REPEAT CONTAINING |
OS493_019521-T1 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE |
OS493_019522-T1 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE |
OS493_019523-T1 | ANKYRIN REPEAT PROTEIN |
OS493_019524-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
OS493_019525-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
OS493_019526-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
OS493_019527-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
OS493_019528-T1 | |
OS493_019529-T1 | PERFORIN-LIKE PROTEIN 1 |
OS493_019530-T1 | PERFORIN-LIKE PROTEIN 1 |
OS493_019531-T1 | ANKYRIN REPEAT PROTEIN |
OS493_019532-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
OS493_019533-T1 | PERFORIN-LIKE PROTEIN 1 |
OS493_019534-T1 | ALCOHOL DEHYDROGENASE |
OS493_019535-T1 | |
OS493_019536-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
OS493_019537-T1 | ALCOHOL DEHYDROGENASE |
OS493_019538-T1 | |
OS493_019540-T1 | |
OS493_019541-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_019542-T1 | |
OS493_019543-T1 | |
OS493_019544-T1 | RIBOSOMAL PROTEIN S6 KINASE |
OS493_019545-T1 | |
OS493_019546-T1 | |
OS493_019547-T1 | |
OS493_019548-T1 | DRAB11-RELATED |
OS493_019549-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_019551-T1 | |
OS493_019552-T1 | |
OS493_019553-T1 | |
OS493_019555-T1 | |
OS493_019556-T1 | |
OS493_019557-T1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |