About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_019505-T1FRIZZLED
OS493_019506-T1CENTROSOMAL PROTEIN OF 44 KDA
OS493_019507-T1TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2
OS493_019508-T1
OS493_019509-T1LIPOXYGENASE
OS493_019510-T1
OS493_019511-T1
OS493_019512-T1
OS493_019513-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_019514-T1
OS493_019515-T1
OS493_019516-T1
OS493_019517-T1HCLS1-BINDING PROTEIN 3
OS493_019518-T1MYOTUBULARIN-RELATED
OS493_019519-T1UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX ASSEMBLY FACTOR 2
OS493_019520-T1ANKYRIN REPEAT CONTAINING
OS493_019521-T1GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE
OS493_019522-T1GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE
OS493_019523-T1ANKYRIN REPEAT PROTEIN
OS493_019524-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
OS493_019525-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
OS493_019526-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
OS493_019527-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
OS493_019528-T1
OS493_019529-T1PERFORIN-LIKE PROTEIN 1
OS493_019530-T1PERFORIN-LIKE PROTEIN 1
OS493_019531-T1ANKYRIN REPEAT PROTEIN
OS493_019532-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
OS493_019533-T1PERFORIN-LIKE PROTEIN 1
OS493_019534-T1ALCOHOL DEHYDROGENASE
OS493_019535-T1
OS493_019536-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
OS493_019537-T1ALCOHOL DEHYDROGENASE
OS493_019538-T1
OS493_019540-T1
OS493_019541-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_019542-T1
OS493_019543-T1
OS493_019544-T1RIBOSOMAL PROTEIN S6 KINASE
OS493_019545-T1
OS493_019546-T1
OS493_019547-T1
OS493_019548-T1DRAB11-RELATED
OS493_019549-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
OS493_019551-T1
OS493_019552-T1
OS493_019553-T1
OS493_019555-T1
OS493_019556-T1
OS493_019557-T1SAM DOMAIN-CONTAINING PROTEIN-RELATED
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