About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_019451-T1STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
OS493_019452-T1STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
OS493_019453-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_019454-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_019455-T130S RIBOSOMAL PROTEIN S12 FAMILY MEMBER
OS493_019456-T1WD40 REPEAT PROTEINPRL1/PRL2-RELATED
OS493_019457-T1HIRA-INTERACTING PROTEIN 3
OS493_019458-T1UNCHARACTERIZED
OS493_019459-T1UNCHARACTERIZED
OS493_019460-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_019461-T1CATION TRANSPORTING ATPASE
OS493_019462-T1CATION TRANSPORTING ATPASE
OS493_019463-T1CATION TRANSPORTING ATPASE
OS493_019464-T1AMMONIUM TRANSPORTER
OS493_019465-T1CUBILIN-LIKE PROTEIN
OS493_019466-T1OVOCHYMASE-RELATED
OS493_019468-T1INTELECTIN
OS493_019469-T1G PROTEIN-COUPLED RECEPTOR-RELATED
OS493_019470-T1
OS493_019471-T1
OS493_019474-T1
OS493_019475-T1
OS493_019476-T1
OS493_019477-T1
OS493_019478-T1
OS493_019479-T1
OS493_019480-T1
OS493_019481-T1EXPRESSED PROTEIN
OS493_019482-T1
OS493_019483-T1
OS493_019484-T1
OS493_019486-T1
OS493_019487-T1SERINE/THREONINE-PROTEIN KINASE PLK
OS493_019488-T1
OS493_019489-T1
OS493_019490-T1
OS493_019491-T1
OS493_019492-T1PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 5
OS493_019493-T1
OS493_019494-T1
OS493_019495-T1
OS493_019496-T1
OS493_019497-T1
OS493_019498-T1
OS493_019499-T1INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
OS493_019500-T1
OS493_019501-T1
OS493_019502-T1
OS493_019503-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_019504-T1PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
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