Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_019138-T1 | PROTEIN NEDD1 |
OS493_019139-T1 | PROTEIN NEDD1 |
OS493_019140-T1 | |
OS493_019141-T1 | |
OS493_019142-T1 | |
OS493_019143-T1 | MEPRIN/TRAF-LIKE MATH FAMILY-C.ELEGANS |
OS493_019144-T1 | SWI/SNF-RELATED |
OS493_019145-T1 | SWI/SNF-RELATED |
OS493_019146-T1 | |
OS493_019147-T1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
OS493_019148-T1 | UNCHARACTERIZED |
OS493_019149-T1 | GLYCOGEN SYNTHASE |
OS493_019151-T1 | SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER |
OS493_019152-T1 | PROTEIN FOLDING REGULATOR |
OS493_019153-T1 | RMLC-LIKE JELLY ROLL FOLD PROTEIN |
OS493_019154-T1 | CHONDROITIN SYNTHASE |
OS493_019155-T1 | GLYCOPROTEIN HORMONE RECEPTOR |
OS493_019156-T1 | UNCHARACTERIZED |
OS493_019157-T1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
OS493_019158-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
OS493_019159-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
OS493_019160-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_019161-T1 | VILLIN |
OS493_019162-T1 | VILLIN |
OS493_019163-T1 | VILLIN |
OS493_019164-T1 | |
OS493_019165-T1 | NUCLEOBINDIN |
OS493_019166-T1 | |
OS493_019167-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_019168-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
OS493_019169-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_019170-T1 | RETICULOCALBIN |
OS493_019171-T1 | RETICULOCALBIN |
OS493_019173-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_019174-T1 | |
OS493_019175-T1 | |
OS493_019176-T1 | CYTOCHROME P450 508A4-RELATED |
OS493_019177-T1 | |
OS493_019178-T1 | CYTOCHROME P450 508A4-RELATED |
OS493_019179-T1 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
OS493_019180-T1 | |
OS493_019181-T1 | |
OS493_019182-T1 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
OS493_019183-T1 | |
OS493_019184-T1 | |
OS493_019185-T1 | MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT |
OS493_019186-T1 | WD REPEAT PROTEIN 8-RELATED |
OS493_019187-T1 | |
OS493_019188-T1 | KREMEN PROTEIN |
OS493_019189-T1 |