About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_019138-T1PROTEIN NEDD1
OS493_019139-T1PROTEIN NEDD1
OS493_019140-T1
OS493_019141-T1
OS493_019142-T1
OS493_019143-T1MEPRIN/TRAF-LIKE MATH FAMILY-C.ELEGANS
OS493_019144-T1SWI/SNF-RELATED
OS493_019145-T1SWI/SNF-RELATED
OS493_019146-T1
OS493_019147-T1GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
OS493_019148-T1UNCHARACTERIZED
OS493_019149-T1GLYCOGEN SYNTHASE
OS493_019151-T1SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER
OS493_019152-T1PROTEIN FOLDING REGULATOR
OS493_019153-T1RMLC-LIKE JELLY ROLL FOLD PROTEIN
OS493_019154-T1CHONDROITIN SYNTHASE
OS493_019155-T1GLYCOPROTEIN HORMONE RECEPTOR
OS493_019156-T1UNCHARACTERIZED
OS493_019157-T1LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
OS493_019158-T1RAN GTPASE-ACTIVATING PROTEIN 1
OS493_019159-T1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
OS493_019160-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_019161-T1VILLIN
OS493_019162-T1VILLIN
OS493_019163-T1VILLIN
OS493_019164-T1
OS493_019165-T1NUCLEOBINDIN
OS493_019166-T1
OS493_019167-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_019168-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_019169-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_019170-T1RETICULOCALBIN
OS493_019171-T1RETICULOCALBIN
OS493_019173-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_019174-T1
OS493_019175-T1
OS493_019176-T1CYTOCHROME P450 508A4-RELATED
OS493_019177-T1
OS493_019178-T1CYTOCHROME P450 508A4-RELATED
OS493_019179-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_019180-T1
OS493_019181-T1
OS493_019182-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_019183-T1
OS493_019184-T1
OS493_019185-T1MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT
OS493_019186-T1WD REPEAT PROTEIN 8-RELATED
OS493_019187-T1
OS493_019188-T1KREMEN PROTEIN
OS493_019189-T1
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