Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_019084-T1 | |
OS493_019085-T1 | |
OS493_019086-T1 | |
OS493_019087-T1 | |
OS493_019088-T1 | |
OS493_019089-T1 | |
OS493_019090-T1 | |
OS493_019091-T1 | |
OS493_019092-T1 | |
OS493_019093-T1 | ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1 |
OS493_019094-T1 | |
OS493_019095-T1 | TYROSINE PHOSPHATSE N18, PUTATIVE-RELATED |
OS493_019096-T1 | |
OS493_019097-T1 | |
OS493_019098-T1 | PENTRAXIN |
OS493_019099-T1 | FI04643P-RELATED |
OS493_019101-T1 | PENTRAXIN |
OS493_019102-T1 | |
OS493_019103-T1 | FI04643P-RELATED |
OS493_019104-T1 | HYR DOMAIN-CONTAINING PROTEIN |
OS493_019105-T1 | HYR DOMAIN-CONTAINING PROTEIN |
OS493_019106-T1 | |
OS493_019107-T1 | |
OS493_019108-T1 | PENTRAXIN |
OS493_019109-T1 | FI04643P-RELATED |
OS493_019110-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
OS493_019111-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_019112-T1 | |
OS493_019113-T1 | SORTING NEXIN FAMILY MEMBER |
OS493_019115-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_019117-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 9 |
OS493_019118-T1 | PIERCE HOMOLOG |
OS493_019119-T1 | FUKUTIN RELATED PROTEIN |
OS493_019120-T1 | |
OS493_019121-T1 | |
OS493_019122-T1 | SELENIDE, WATER DIKINASE |
OS493_019123-T1 | |
OS493_019124-T1 | GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1 |
OS493_019125-T1 | GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1 |
OS493_019127-T1 | GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1 |
OS493_019128-T1 | |
OS493_019129-T1 | |
OS493_019130-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
OS493_019131-T1 | SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED |
OS493_019132-T1 | |
OS493_019133-T1 | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED |
OS493_019134-T1 | AMINO ACID TRANSPORTER |
OS493_019135-T1 | |
OS493_019136-T1 | PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL |
OS493_019137-T1 | PROTEIN NEDD1 |