Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_018767-T1 | |
OS493_018768-T1 | |
OS493_018769-T1 | ETS |
OS493_018770-T1 | |
OS493_018771-T1 | THROMBOSPONDIN-TYPE LAMININ G DOMAIN AND EAR REPEAT-CONTAINING |
OS493_018772-T1 | |
OS493_018773-T1 | |
OS493_018774-T1 | |
OS493_018775-T1 | |
OS493_018776-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_018777-T1 | |
OS493_018778-T1 | |
OS493_018779-T1 | THROMBOSPONDIN-TYPE LAMININ G DOMAIN AND EAR REPEAT-CONTAINING |
OS493_018780-T1 | |
OS493_018781-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_018782-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_018783-T1 | |
OS493_018784-T1 | |
OS493_018785-T1 | |
OS493_018786-T1 | |
OS493_018787-T1 | |
OS493_018788-T1 | |
OS493_018789-T1 | VERTNIN |
OS493_018790-T1 | |
OS493_018791-T1 | |
OS493_018792-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_018793-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
OS493_018794-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
OS493_018795-T1 | |
OS493_018796-T1 | |
OS493_018797-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_018798-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_018799-T1 | |
OS493_018800-T1 | SRCR DOMAIN-CONTAINING PROTEIN |
OS493_018801-T1 | SRCR DOMAIN-CONTAINING PROTEIN |
OS493_018802-T1 | |
OS493_018803-T1 | SRCR DOMAIN-CONTAINING PROTEIN |
OS493_018804-T1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
OS493_018805-T1 | PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR |
OS493_018806-T1 | |
OS493_018807-T1 | |
OS493_018808-T1 | |
OS493_018809-T1 | |
OS493_018810-T1 | |
OS493_018811-T1 | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE |
OS493_018812-T1 | |
OS493_018813-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN |
OS493_018814-T1 | TYROSINASE FAMILY MEMBER |
OS493_018815-T1 | |
OS493_018816-T1 |