About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_018767-T1
OS493_018768-T1
OS493_018769-T1ETS
OS493_018770-T1
OS493_018771-T1THROMBOSPONDIN-TYPE LAMININ G DOMAIN AND EAR REPEAT-CONTAINING
OS493_018772-T1
OS493_018773-T1
OS493_018774-T1
OS493_018775-T1
OS493_018776-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_018777-T1
OS493_018778-T1
OS493_018779-T1THROMBOSPONDIN-TYPE LAMININ G DOMAIN AND EAR REPEAT-CONTAINING
OS493_018780-T1
OS493_018781-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_018782-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_018783-T1
OS493_018784-T1
OS493_018785-T1
OS493_018786-T1
OS493_018787-T1
OS493_018788-T1
OS493_018789-T1VERTNIN
OS493_018790-T1
OS493_018791-T1
OS493_018792-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_018793-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
OS493_018794-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
OS493_018795-T1
OS493_018796-T1
OS493_018797-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_018798-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_018799-T1
OS493_018800-T1SRCR DOMAIN-CONTAINING PROTEIN
OS493_018801-T1SRCR DOMAIN-CONTAINING PROTEIN
OS493_018802-T1
OS493_018803-T1SRCR DOMAIN-CONTAINING PROTEIN
OS493_018804-T1DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED
OS493_018805-T1PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR
OS493_018806-T1
OS493_018807-T1
OS493_018808-T1
OS493_018809-T1
OS493_018810-T1
OS493_018811-T1CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE
OS493_018812-T1
OS493_018813-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN
OS493_018814-T1TYROSINASE FAMILY MEMBER
OS493_018815-T1
OS493_018816-T1
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