Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_018662-T1 | GATOR COMPLEX PROTEIN WDR59 |
OS493_018663-T1 | LIM DOMAIN-CONTAINING PROTEIN JUB |
OS493_018664-T1 | CTF8, CHROMOSOME TRANSMISSION FIDELITY FACTOR 8 HOMOLOG (S. CEREVISIAE) |
OS493_018665-T1 | ATAXIN-3-RELATED |
OS493_018666-T1 | |
OS493_018667-T1 | SSM4 PROTEIN |
OS493_018668-T1 | SSM4 PROTEIN |
OS493_018669-T1 | |
OS493_018670-T1 | GPI TRANSAMIDASE COMPONENT PIG-T-RELATED |
OS493_018671-T1 | PIKACHURIN-LIKE PROTEIN |
OS493_018672-T1 | |
OS493_018673-T1 | CADHERIN-23 |
OS493_018674-T1 | CADHERIN-87A |
OS493_018675-T1 | |
OS493_018676-T1 | CADHERIN-23 |
OS493_018677-T1 | CADHERIN-23 |
OS493_018678-T1 | PIKACHURIN-LIKE PROTEIN |
OS493_018679-T1 | CADHERIN-23 |
OS493_018680-T1 | CADHERIN-23 |
OS493_018681-T1 | |
OS493_018682-T1 | RIBOSOME RECYCLING FACTOR |
OS493_018683-T1 | TRANSMEMBRANE PROTEIN 189 |
OS493_018684-T1 | SARCOSINE DEHYDROGENASE-RELATED |
OS493_018685-T1 | |
OS493_018686-T1 | |
OS493_018687-T1 | |
OS493_018688-T1 | |
OS493_018689-T1 | |
OS493_018690-T1 | |
OS493_018691-T1 | |
OS493_018692-T1 | - |
OS493_018693-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_018694-T1 | ARGININE OR CREATINE KINASE |
OS493_018695-T1 | ARGININE OR CREATINE KINASE |
OS493_018696-T1 | SACCHAROPINE DEHYDROGENASE |
OS493_018697-T1 | SACCHAROPINE DEHYDROGENASE |
OS493_018698-T1 | FATTY ACID DESATURASE 2 |
OS493_018699-T1 | SACCHAROPINE DEHYDROGENASE |
OS493_018700-T1 | ENHANCER OF MRNA-DECAPPING PROTEIN 4 |
OS493_018701-T1 | RNA POLYMERASE II CTD PHOSPHATASE |
OS493_018702-T1 | POLY(A) RNA POLYMERASE |
OS493_018703-T1 | ZINC FINGER PROTEIN |
OS493_018704-T1 | BETA-CATENIN-LIKE PROTEIN 1 NUCLEAR ASSOCIATED PROTEIN |
OS493_018705-T1 | |
OS493_018706-T1 | FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 24 |
OS493_018707-T1 | - |
OS493_018708-T1 | |
OS493_018709-T1 | LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED |
OS493_018710-T1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
OS493_018713-T1 | IMPORTIN BETA |