About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_018454-T1DNAJ HOMOLOG SUBFAMILY C MEMBER
OS493_018455-T1BCL2-ASSOCIATED ATHANOGENE
OS493_018456-T1TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3
OS493_018457-T1TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12
OS493_018458-T1MONOCARBOXYLATE TRANSPORTER
OS493_018459-T1MONOCARBOXYLATE TRANSPORTER
OS493_018460-T1MONOCARBOXYLATE TRANSPORTER
OS493_018461-T1
OS493_018462-T1
OS493_018463-T1
OS493_018464-T1
OS493_018465-T1
OS493_018466-T1
OS493_018467-T1
OS493_018468-T1
OS493_018469-T1
OS493_018470-T1AGAP005574-PA
OS493_018471-T1
OS493_018472-T1SERINE-THREONINE PROTEIN KINASE
OS493_018473-T1
OS493_018475-T1
OS493_018476-T1
OS493_018477-T1
OS493_018478-T1
OS493_018479-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
OS493_018480-T1
OS493_018481-T1
OS493_018482-T1
OS493_018483-T1VERTNIN
OS493_018484-T1
OS493_018485-T1
OS493_018486-T1DNA HELICASE RECQ FAMILY MEMBER
OS493_018487-T1
OS493_018489-T1SERINE-THREONINE PROTEIN KINASE
OS493_018490-T1DNA HELICASE RECQ FAMILY MEMBER
OS493_018491-T1
OS493_018492-T1VERTNIN
OS493_018493-T1
OS493_018494-T1
OS493_018495-T1
OS493_018496-T1
OS493_018497-T1
OS493_018498-T1
OS493_018499-T1
OS493_018500-T1
OS493_018501-T1PHD-TYPE DOMAIN-CONTAINING PROTEIN
OS493_018502-T1
OS493_018503-T1
OS493_018504-T1
OS493_018505-T1
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