About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_018351-T1ZINC FINGER B-BOX DOMAIN-CONTAINING PROTEIN 1
OS493_018352-T1UPF0722 PROTEIN C11ORF88
OS493_018353-T1BCL2-ASSOCIATED ATHANOGENE
OS493_018354-T1ENDONUCLEASE RELATED
OS493_018355-T1ENDONUCLEASE RELATED
OS493_018356-T1PLATELET-DERIVED GROWTH FACTOR
OS493_018357-T1
OS493_018358-T1
OS493_018359-T1PLATELET-DERIVED GROWTH FACTOR
OS493_018360-T1FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN
OS493_018361-T1CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE
OS493_018362-T1
OS493_018363-T1
OS493_018364-T1CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE
OS493_018365-T1CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE
OS493_018366-T1NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4
OS493_018367-T1OUTER SEGMENT 5
OS493_018368-T1OUTER SEGMENT 5
OS493_018369-T1
OS493_018370-T1CONTACTIN 5
OS493_018371-T1
OS493_018372-T1
OS493_018373-T1
OS493_018374-T1
OS493_018376-T1
OS493_018377-T1
OS493_018378-T1INTELECTIN
OS493_018379-T1STROMAL ANTIGEN
OS493_018380-T1
OS493_018381-T1PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1
OS493_018382-T1-
OS493_018383-T1ACETYL-COA C-ACYLTRANSFERASE
OS493_018384-T1GCIP-INTERACTING PROTEIN P29
OS493_018385-T12-5A-DEPENDENT RIBONUCLEASE
OS493_018386-T1-
OS493_018387-T1SERINE-THREONINE PROTEIN KINASE
OS493_018388-T1MICROSOMAL GLUTATHIONE S-TRANSFERASE
OS493_018389-T1MULTICOPPER OXIDASE-RELATED
OS493_018390-T1COLLAGEN ALPHA
OS493_018391-T1
OS493_018392-T1
OS493_018393-T1MULTICOPPER OXIDASE-RELATED
OS493_018394-T1
OS493_018395-T1
OS493_018396-T1ELONGATION FACTOR TS
OS493_018397-T1COLLAGEN ALPHA
OS493_018398-T1NADPH OXIDASE
OS493_018399-T1NADPH OXIDASE
OS493_018400-T1
OS493_018401-T1WILMS' TUMOR 1-ASSOCIATING PROTEIN
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