Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_018351-T1 | ZINC FINGER B-BOX DOMAIN-CONTAINING PROTEIN 1 |
OS493_018352-T1 | UPF0722 PROTEIN C11ORF88 |
OS493_018353-T1 | BCL2-ASSOCIATED ATHANOGENE |
OS493_018354-T1 | ENDONUCLEASE RELATED |
OS493_018355-T1 | ENDONUCLEASE RELATED |
OS493_018356-T1 | PLATELET-DERIVED GROWTH FACTOR |
OS493_018357-T1 | |
OS493_018358-T1 | |
OS493_018359-T1 | PLATELET-DERIVED GROWTH FACTOR |
OS493_018360-T1 | FRAGILE X MENTAL RETARDATION SYNDROME-RELATED PROTEIN |
OS493_018361-T1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
OS493_018362-T1 | |
OS493_018363-T1 | |
OS493_018364-T1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
OS493_018365-T1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
OS493_018366-T1 | NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4 |
OS493_018367-T1 | OUTER SEGMENT 5 |
OS493_018368-T1 | OUTER SEGMENT 5 |
OS493_018369-T1 | |
OS493_018370-T1 | CONTACTIN 5 |
OS493_018371-T1 | |
OS493_018372-T1 | |
OS493_018373-T1 | |
OS493_018374-T1 | |
OS493_018376-T1 | |
OS493_018377-T1 | |
OS493_018378-T1 | INTELECTIN |
OS493_018379-T1 | STROMAL ANTIGEN |
OS493_018380-T1 | |
OS493_018381-T1 | PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1 |
OS493_018382-T1 | - |
OS493_018383-T1 | ACETYL-COA C-ACYLTRANSFERASE |
OS493_018384-T1 | GCIP-INTERACTING PROTEIN P29 |
OS493_018385-T1 | 2-5A-DEPENDENT RIBONUCLEASE |
OS493_018386-T1 | - |
OS493_018387-T1 | SERINE-THREONINE PROTEIN KINASE |
OS493_018388-T1 | MICROSOMAL GLUTATHIONE S-TRANSFERASE |
OS493_018389-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_018390-T1 | COLLAGEN ALPHA |
OS493_018391-T1 | |
OS493_018392-T1 | |
OS493_018393-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_018394-T1 | |
OS493_018395-T1 | |
OS493_018396-T1 | ELONGATION FACTOR TS |
OS493_018397-T1 | COLLAGEN ALPHA |
OS493_018398-T1 | NADPH OXIDASE |
OS493_018399-T1 | NADPH OXIDASE |
OS493_018400-T1 | |
OS493_018401-T1 | WILMS' TUMOR 1-ASSOCIATING PROTEIN |