About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_018035-T1LOQUACIOUS, ISOFORM B
OS493_018036-T1RNA-BINDING PROTEIN LUC7-RELATED
OS493_018037-T1
OS493_018038-T1SERINE/THREONINE-PROTEIN KINASE LMTK1
OS493_018039-T1
OS493_018040-T1METHYLTRANSFERASE-RELATED
OS493_018041-T1
OS493_018042-T1
OS493_018043-T1
OS493_018044-T1UNCHARACTERIZED
OS493_018045-T1ALPHA-L-FUCOSIDASE
OS493_018046-T1ALPHA-L-FUCOSIDASE
OS493_018047-T1PERFORIN-LIKE PROTEIN 1
OS493_018048-T1PERFORIN-LIKE PROTEIN 1
OS493_018049-T1
OS493_018050-T1PERFORIN-LIKE PROTEIN 1
OS493_018051-T1
OS493_018052-T1BATTENIN
OS493_018053-T1BATTENIN
OS493_018054-T1BATTENIN
OS493_018055-T1TUBERIN
OS493_018056-T1TUBERIN
OS493_018057-T1
OS493_018058-T1
OS493_018059-T1
OS493_018060-T1
OS493_018061-T1
OS493_018062-T1
OS493_018063-T1
OS493_018064-T1
OS493_018065-T1
OS493_018066-T1
OS493_018067-T1
OS493_018068-T1
OS493_018069-T1
OS493_018070-T1
OS493_018071-T1
OS493_018072-T1
OS493_018073-T1
OS493_018074-T1
OS493_018075-T1
OS493_018076-T1
OS493_018077-T1
OS493_018078-T1PROTEIN TRANSPORT PROTEIN SEC23
OS493_018079-T1PROTEIN TRANSPORT PROTEIN SEC23
OS493_018080-T1
OS493_018081-T1GLYCOSYL HYDROLASE-RELATED
OS493_018082-T1GLYCOSYL HYDROLASE-RELATED
OS493_018083-T1
OS493_018084-T13'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1
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