About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017722-T1
OS493_017723-T1GDP-L-FUCOSE SYNTHASE
OS493_017724-T1TOLL-INTERACTING PROTEIN
OS493_017725-T1DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 12
OS493_017726-T1
OS493_017727-T1COATOMER
OS493_017728-T1RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1
OS493_017729-T1BATTENIN
OS493_017730-T1
OS493_017731-T1
OS493_017734-T1
OS493_017735-T1THYMIDINE PHOSPHORYLASE
OS493_017736-T1THYMIDINE PHOSPHORYLASE
OS493_017737-T1MITOCHONDRIAL ATP SYNTHASE B CHAIN
OS493_017738-T1
OS493_017739-T1INTELECTIN
OS493_017740-T1
OS493_017741-T1
OS493_017742-T1LEUCOKININ RECEPTOR-RELATED
OS493_017743-T1LEUCOKININ RECEPTOR-RELATED
OS493_017744-T1LEUCOKININ RECEPTOR-RELATED
OS493_017745-T1SAND PROTEIN-RELATED
OS493_017746-T1THYMOCYTE NUCLEAR PROTEIN 1
OS493_017747-T1FUKUTIN RELATED PROTEIN
OS493_017748-T1FUKUTIN RELATED PROTEIN
OS493_017749-T1FUKUTIN RELATED PROTEIN
OS493_017750-T1SNARE PROTEINS
OS493_017751-T1
OS493_017752-T1PROTEIN CIP2A
OS493_017753-T1CADHERIN-23
OS493_017754-T1
OS493_017755-T1
OS493_017756-T1MULTICOPPER OXIDASE-RELATED
OS493_017757-T1PROTEIN CBG12474
OS493_017758-T1LITHOSTATHINE
OS493_017759-T1
OS493_017760-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_017761-T1COLLAGEN ALPHA
OS493_017762-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_017763-T1
OS493_017764-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_017766-T1
OS493_017767-T1
OS493_017771-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_017772-T1LEUCOKININ RECEPTOR-RELATED
OS493_017773-T1
OS493_017774-T1C-REACTIVE PROTEIN-RELATED
OS493_017775-T1ZINC FINGER PROTEIN AEBP2
OS493_017776-T1MUSCLEBLIND-LIKE PROTEIN
OS493_017777-T1BANK1/PIK3AP1 FAMILY MEMBER
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