About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017878-T1FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1
OS493_017879-T1
OS493_017880-T1
OS493_017881-T1
OS493_017882-T1
OS493_017883-T1DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
OS493_017884-T1DYNEIN HEAVY CHAIN
OS493_017885-T1UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN
OS493_017886-T1UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN
OS493_017887-T1POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN
OS493_017888-T1SAD1/UNC-84-LIKE PROTEIN-RELATED
OS493_017889-T1SAD1/UNC-84-LIKE PROTEIN-RELATED
OS493_017890-T1G PROTEIN-COUPLED RECEPTOR
OS493_017891-T1
OS493_017892-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_017893-T1
OS493_017894-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_017895-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_017896-T1COMPLEX III ASSEMBLY FACTOR LYRM7
OS493_017897-T1PRE-MRNA-SPLICING FACTOR RBM22
OS493_017898-T1DOM-3 RELATED
OS493_017899-T1BAT4 PROTEIN-RELATED
OS493_017900-T1MODULATOR OF SMOOTHENED PROTEIN
OS493_017901-T1RIBONUCLEASE P PROTEIN SUBUNIT P20
OS493_017902-T1HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
OS493_017903-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_017904-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_017905-T1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
OS493_017906-T1
OS493_017907-T1
OS493_017908-T1WD-40 REPEAT PROTEIN
OS493_017909-T1WD-40 REPEAT PROTEIN
OS493_017910-T1WD-40 REPEAT PROTEIN
OS493_017911-T1
OS493_017912-T1
OS493_017913-T1TMEM26 PROTEIN
OS493_017914-T1
OS493_017915-T1
OS493_017917-T1ENDO BETA N-ACETYLGLUCOSAMINIDASE
OS493_017918-T1ENDO BETA N-ACETYLGLUCOSAMINIDASE
OS493_017919-T1ENDO BETA N-ACETYLGLUCOSAMINIDASE
OS493_017920-T1ENDO BETA N-ACETYLGLUCOSAMINIDASE
OS493_017921-T1
OS493_017922-T1
OS493_017923-T1MEVALONATE KINASE/GALACTOKINASE
OS493_017924-T1CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED
OS493_017925-T1
OS493_017926-T1
OS493_017927-T1
OS493_017928-T1SET AND MYND DOMAIN-CONTAINING PROTEIN 4
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