Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_017878-T1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
OS493_017879-T1 | |
OS493_017880-T1 | |
OS493_017881-T1 | |
OS493_017882-T1 | |
OS493_017883-T1 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
OS493_017884-T1 | DYNEIN HEAVY CHAIN |
OS493_017885-T1 | UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN |
OS493_017886-T1 | UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN |
OS493_017887-T1 | POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN |
OS493_017888-T1 | SAD1/UNC-84-LIKE PROTEIN-RELATED |
OS493_017889-T1 | SAD1/UNC-84-LIKE PROTEIN-RELATED |
OS493_017890-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_017891-T1 | |
OS493_017892-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_017893-T1 | |
OS493_017894-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_017895-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_017896-T1 | COMPLEX III ASSEMBLY FACTOR LYRM7 |
OS493_017897-T1 | PRE-MRNA-SPLICING FACTOR RBM22 |
OS493_017898-T1 | DOM-3 RELATED |
OS493_017899-T1 | BAT4 PROTEIN-RELATED |
OS493_017900-T1 | MODULATOR OF SMOOTHENED PROTEIN |
OS493_017901-T1 | RIBONUCLEASE P PROTEIN SUBUNIT P20 |
OS493_017902-T1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
OS493_017903-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_017904-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_017905-T1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
OS493_017906-T1 | |
OS493_017907-T1 | |
OS493_017908-T1 | WD-40 REPEAT PROTEIN |
OS493_017909-T1 | WD-40 REPEAT PROTEIN |
OS493_017910-T1 | WD-40 REPEAT PROTEIN |
OS493_017911-T1 | |
OS493_017912-T1 | |
OS493_017913-T1 | TMEM26 PROTEIN |
OS493_017914-T1 | |
OS493_017915-T1 | |
OS493_017917-T1 | ENDO BETA N-ACETYLGLUCOSAMINIDASE |
OS493_017918-T1 | ENDO BETA N-ACETYLGLUCOSAMINIDASE |
OS493_017919-T1 | ENDO BETA N-ACETYLGLUCOSAMINIDASE |
OS493_017920-T1 | ENDO BETA N-ACETYLGLUCOSAMINIDASE |
OS493_017921-T1 | |
OS493_017922-T1 | |
OS493_017923-T1 | MEVALONATE KINASE/GALACTOKINASE |
OS493_017924-T1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED |
OS493_017925-T1 | |
OS493_017926-T1 | |
OS493_017927-T1 | |
OS493_017928-T1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |