Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_017929-T1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 4 |
OS493_017930-T1 | PEFLIN |
OS493_017931-T1 | |
OS493_017932-T1 | DYNACTIN SUBUNIT 5 |
OS493_017933-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_017934-T1 | CYTOCHROME P450 FAMILY 3 |
OS493_017935-T1 | METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN |
OS493_017936-T1 | WD-40 REPEAT PROTEIN |
OS493_017937-T1 | |
OS493_017938-T1 | WD-40 REPEAT PROTEIN |
OS493_017939-T1 | UPF0193 PROTEIN EVG1 |
OS493_017940-T1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
OS493_017941-T1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
OS493_017942-T1 | PHD FINGER TRANSCRIPTION FACTOR |
OS493_017943-T1 | |
OS493_017945-T1 | |
OS493_017946-T1 | |
OS493_017947-T1 | PHD FINGER TRANSCRIPTION FACTOR |
OS493_017948-T1 | CENTROSOMAL PROTEIN OF 131 KDA |
OS493_017949-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017950-T1 | HISTONE H1 |
OS493_017951-T1 | |
OS493_017953-T1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
OS493_017954-T1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
OS493_017955-T1 | POLYCYSTIN-1 |
OS493_017956-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_017957-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_017958-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_017959-T1 | |
OS493_017960-T1 | BETA1,4 MANNOSYLTRANSFERASE |
OS493_017961-T1 | |
OS493_017962-T1 | FASCIN |
OS493_017963-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_017964-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_017965-T1 | |
OS493_017966-T1 | |
OS493_017967-T1 | |
OS493_017968-T1 | METALLOPROTEASE |
OS493_017969-T1 | ZINC FINGER PROTEIN 598 |
OS493_017970-T1 | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED |
OS493_017971-T1 | 40S RIBOSOMAL PROTEIN SA |
OS493_017972-T1 | ECSIT EVOLUTIONARILY CONSERVED SIGNALING INTERMEDIATE IN TOLL PATHWAYS |
OS493_017973-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_017974-T1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
OS493_017975-T1 | WW DOMAIN-BINDING PROTEIN 11 |
OS493_017976-T1 | M-AAA PROTEASE-INTERACTING PROTEIN 1, MITOCHONDRIAL |
OS493_017977-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_017978-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_017979-T1 | |
OS493_017980-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |