About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_018085-T1
OS493_018086-T1MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
OS493_018087-T1CYTIDINE DEAMINASE
OS493_018088-T1PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
OS493_018089-T13-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN
OS493_018090-T1NISCHARIN RELATED
OS493_018091-T1UNCHARACTERIZED
OS493_018092-T1SCY1-RELATED S/T PROTEIN KINASE-LIKE
OS493_018093-T1
OS493_018094-T1
OS493_018096-T1ENDONUCLEASE RELATED
OS493_018097-T1-
OS493_018098-T1
OS493_018099-T1
OS493_018100-T1
OS493_018101-T1
OS493_018102-T1-
OS493_018103-T1-
OS493_018104-T1-
OS493_018105-T1-
OS493_018106-T1
OS493_018107-T1
OS493_018108-T1
OS493_018109-T1
OS493_018110-T1
OS493_018111-T1
OS493_018112-T1PERIAXIN/AHNAK
OS493_018113-T1PERIAXIN/AHNAK
OS493_018114-T1
OS493_018115-T1CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81
OS493_018116-T1
OS493_018117-T1INTERFERON-INDUCIBLE GTPASE
OS493_018118-T1INTERFERON-INDUCIBLE GTPASE
OS493_018120-T1
OS493_018121-T1
OS493_018122-T1
OS493_018123-T1
OS493_018124-T1SYNAPTOTAGMIN
OS493_018125-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_018126-T1DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER
OS493_018127-T1
OS493_018128-T1HISTIDINE-RICH GLYCOPROTEIN
OS493_018129-T1HISTIDINE-RICH GLYCOPROTEIN
OS493_018130-T1HISTIDINE-RICH GLYCOPROTEIN
OS493_018131-T1HISTIDINE-RICH GLYCOPROTEIN
OS493_018133-T1UNCHARACTERIZED
OS493_018134-T1
OS493_018136-T1PRE-MRNA SPLICING FACTOR PRP8
OS493_018137-T1PRE-MRNA SPLICING FACTOR PRP8
OS493_018138-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
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