Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_017828-T1 | CYCLIN-DEPENDENT KINASE INHIBITOR 1 |
OS493_017829-T1 | CRYPTOCHROME |
OS493_017830-T1 | CRYPTOCHROME |
OS493_017831-T1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
OS493_017832-T1 | MITOCHONDRIAL CARRIER HOMOLOG |
OS493_017833-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
OS493_017834-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
OS493_017835-T1 | |
OS493_017836-T1 | ACID PHOSPHATASE-RELATED |
OS493_017837-T1 | |
OS493_017838-T1 | LEUKOCYTE RECEPTOR CLUSTER MEMBER 9 |
OS493_017839-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_017840-T1 | PROPERDIN |
OS493_017841-T1 | |
OS493_017842-T1 | PROPERDIN |
OS493_017843-T1 | |
OS493_017844-T1 | |
OS493_017845-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
OS493_017846-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
OS493_017847-T1 | |
OS493_017848-T1 | |
OS493_017849-T1 | UNCHARACTERIZED |
OS493_017850-T1 | |
OS493_017851-T1 | UNCHARACTERIZED |
OS493_017852-T1 | UNCHARACTERIZED |
OS493_017853-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
OS493_017854-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
OS493_017855-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
OS493_017856-T1 | HEPARAN SULFATE SULFOTRANSFERASE |
OS493_017857-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017858-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017859-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_017860-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
OS493_017861-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_017862-T1 | |
OS493_017863-T1 | RETINOIC ACID INDUCED 1/TRANSCRIPTION FACTOR 20 |
OS493_017864-T1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
OS493_017865-T1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
OS493_017866-T1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
OS493_017867-T1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A |
OS493_017868-T1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A |
OS493_017869-T1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A |
OS493_017870-T1 | D-ERYTHRULOSE REDUCTASE |
OS493_017871-T1 | RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER |
OS493_017872-T1 | |
OS493_017873-T1 | |
OS493_017874-T1 | |
OS493_017875-T1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
OS493_017876-T1 | - |
OS493_017877-T1 | ZINC PHOSPHODIESTERASE ELAC PROTEIN 2 |