About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017828-T1CYCLIN-DEPENDENT KINASE INHIBITOR 1
OS493_017829-T1CRYPTOCHROME
OS493_017830-T1CRYPTOCHROME
OS493_017831-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
OS493_017832-T1MITOCHONDRIAL CARRIER HOMOLOG
OS493_017833-T126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4
OS493_017834-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
OS493_017835-T1
OS493_017836-T1ACID PHOSPHATASE-RELATED
OS493_017837-T1
OS493_017838-T1LEUKOCYTE RECEPTOR CLUSTER MEMBER 9
OS493_017839-T1LEUCOKININ RECEPTOR-RELATED
OS493_017840-T1PROPERDIN
OS493_017841-T1
OS493_017842-T1PROPERDIN
OS493_017843-T1
OS493_017844-T1
OS493_017845-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_017846-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_017847-T1
OS493_017848-T1
OS493_017849-T1UNCHARACTERIZED
OS493_017850-T1
OS493_017851-T1UNCHARACTERIZED
OS493_017852-T1UNCHARACTERIZED
OS493_017853-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED
OS493_017854-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED
OS493_017855-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED
OS493_017856-T1HEPARAN SULFATE SULFOTRANSFERASE
OS493_017857-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_017858-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_017859-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_017860-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_017861-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_017862-T1
OS493_017863-T1RETINOIC ACID INDUCED 1/TRANSCRIPTION FACTOR 20
OS493_017864-T1DILUTE DOMAIN-CONTAINING PROTEIN YPR089W
OS493_017865-T1DILUTE DOMAIN-CONTAINING PROTEIN YPR089W
OS493_017866-T1DILUTE DOMAIN-CONTAINING PROTEIN YPR089W
OS493_017867-T1VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A
OS493_017868-T1VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A
OS493_017869-T1VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3A
OS493_017870-T1D-ERYTHRULOSE REDUCTASE
OS493_017871-T1RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER
OS493_017872-T1
OS493_017873-T1
OS493_017874-T1
OS493_017875-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
OS493_017876-T1-
OS493_017877-T1ZINC PHOSPHODIESTERASE ELAC PROTEIN 2
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