About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017663-T1-
OS493_017664-T1
OS493_017665-T1
OS493_017666-T1
OS493_017667-T1
OS493_017668-T1
OS493_017669-T1
OS493_017670-T1ACTIN
OS493_017672-T1
OS493_017673-T1MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED
OS493_017674-T1
OS493_017675-T1PERFORIN-LIKE PROTEIN 1
OS493_017676-T1MEIOSIS 1 ARREST PROTEIN
OS493_017677-T1
OS493_017678-T1
OS493_017679-T1
OS493_017680-T1
OS493_017681-T1-
OS493_017682-T1MEIOSIS 1 ARREST PROTEIN
OS493_017683-T126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13
OS493_017684-T1
OS493_017686-T1FI19480P1
OS493_017687-T1FI19480P1
OS493_017688-T1
OS493_017689-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_017690-T1PERFORIN-LIKE PROTEIN 1
OS493_017691-T1PERFORIN-LIKE PROTEIN 1
OS493_017694-T1RAS-LIKE FAMILY MEMBER 11
OS493_017695-T1PROSTATE APOPTOSIS RESPONSE PROTEIN PAR-4
OS493_017697-T1
OS493_017698-T1
OS493_017699-T1
OS493_017700-T1SPONDIN
OS493_017702-T1SPONDIN
OS493_017703-T1
OS493_017704-T1UNCHARACTERIZED
OS493_017705-T1G-PROTEIN COUPLED RECEPTOR
OS493_017706-T1UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
OS493_017707-T1
OS493_017708-T1
OS493_017709-T1
OS493_017710-T1
OS493_017711-T1TETRATRICOPEPTIDE REPEAT PROTEIN 14
OS493_017712-T1
OS493_017713-T1
OS493_017714-T1
OS493_017718-T1
OS493_017719-T1
OS493_017720-T1
OS493_017721-T1TRANSMEMBRANE PROTEIN 2-RELATED
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