About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017395-T1
OS493_017396-T1
OS493_017397-T1
OS493_017398-T1
OS493_017399-T1
OS493_017400-T1
OS493_017401-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_017402-T1
OS493_017403-T1
OS493_017404-T1UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN
OS493_017405-T1
OS493_017406-T1
OS493_017407-T1CYTOCHROME P450 FAMILY 4
OS493_017408-T1
OS493_017409-T1
OS493_017410-T1
OS493_017411-T1
OS493_017412-T1DNA2/NAM7 HELICASE FAMILY
OS493_017414-T1
OS493_017415-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_017416-T1PROTEIN FAM45A-RELATED
OS493_017417-T1ATP-DEPENDENT RNA HELICASE
OS493_017418-T1LEUCOKININ RECEPTOR-RELATED
OS493_017419-T1
OS493_017420-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_017421-T1LYSYL OXIDASE-LIKE-RELATED
OS493_017422-T1SRCR DOMAIN-CONTAINING PROTEIN
OS493_017423-T1LYSYL OXIDASE-LIKE-RELATED
OS493_017424-T1SRCR DOMAIN-CONTAINING PROTEIN
OS493_017425-T1LYSYL OXIDASE-LIKE-RELATED
OS493_017426-T1LYSYL OXIDASE-LIKE-RELATED
OS493_017427-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_017428-T1
OS493_017429-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_017430-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_017431-T1PROTEIN FAM204A
OS493_017432-T1
OS493_017433-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_017434-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_017435-T1G-PROTEIN COUPLED RECEPTOR
OS493_017437-T1
OS493_017438-T1PENTRAXIN
OS493_017439-T1G-PROTEIN COUPLED RECEPTOR
OS493_017440-T1PENTRAXIN
OS493_017441-T1LEUCOKININ RECEPTOR-RELATED
OS493_017442-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_017443-T1STEROL REGULATORY ELEMENT-BINDING PROTEIN
OS493_017444-T1STEROL REGULATORY ELEMENT-BINDING PROTEIN
OS493_017445-T1TETRATRICOPEPTIDE REPEAT PROTEIN 29
OS493_017446-T1SEQUESTOSOME 1-RELATED
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