About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017140-T1
OS493_017141-T1COPINE
OS493_017142-T1A-KINASE-INTERACTING PROTEIN 1
OS493_017143-T1VWFA DOMAIN-CONTAINING PROTEIN
OS493_017144-T1N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
OS493_017145-T1
OS493_017146-T1
OS493_017148-T1EXPRESSED PROTEIN
OS493_017149-T1
OS493_017150-T1SIT4 YEAST -ASSOCIATING PROTEIN-RELATED
OS493_017151-T1LYSOSOMAL ACID LIPASE-RELATED
OS493_017152-T1VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL
OS493_017153-T1GENE, 17359-RELATED
OS493_017154-T1
OS493_017155-T1
OS493_017156-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 9
OS493_017157-T13'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1
OS493_017158-T1
OS493_017159-T1ADENOSINE KINASE
OS493_017160-T1
OS493_017161-T1VESICLE PROTEIN SORTING-ASSOCIATED
OS493_017162-T1
OS493_017163-T1STEERIN
OS493_017164-T1CAT EYE SYNDROME CRITICAL REGION PROTEIN 6
OS493_017165-T1FIBROBLAST GROWTH FACTOR
OS493_017166-T1DIHYDRODIPICOLINATE SYNTHASE
OS493_017167-T1
OS493_017168-T1CASEIN KINASE-RELATED
OS493_017169-T1NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE
OS493_017170-T1PX DOMAIN-CONTAINING PROTEIN
OS493_017171-T1NOP14
OS493_017172-T1NOP14
OS493_017173-T1G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
OS493_017174-T1
OS493_017175-T1PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED
OS493_017176-T1VERY KIND PROTEIN
OS493_017177-T1
OS493_017178-T1VERY KIND PROTEIN
OS493_017179-T1
OS493_017180-T1
OS493_017181-T1
OS493_017182-T1NANOS PROTEIN
OS493_017183-T1SHOOTIN-1
OS493_017184-T1SHOOTIN-1
OS493_017185-T1
OS493_017186-T1UNCHARACTERIZED
OS493_017187-T1UNCHARACTERIZED
OS493_017188-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_017190-T1TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
OS493_017191-T1SERINE/THREONINE-PROTEIN KINASE PIM
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