About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016824-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_016825-T1
OS493_016828-T1ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_016829-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_016830-T1
OS493_016831-T1IGF-LIKE FAMILY RECEPTOR 1
OS493_016832-T1
OS493_016833-T1
OS493_016834-T1
OS493_016836-T1UNCHARACTERIZED
OS493_016837-T1UNCHARACTERIZED
OS493_016838-T1SI:CH211-243P7.3-RELATED
OS493_016839-T1
OS493_016841-T1ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_016842-T1
OS493_016843-T1
OS493_016845-T1HOMEOBOX PROTEIN EMX-RELATED
OS493_016846-T1RING-TYPE DOMAIN-CONTAINING PROTEIN
OS493_016847-T1
OS493_016848-T1
OS493_016849-T1QUINONE OXIDOREDUCTASE PIG3-RELATED
OS493_016850-T1
OS493_016851-T1DRAB11-RELATED
OS493_016852-T1CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
OS493_016853-T1CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
OS493_016854-T1RAPSYN-RELATED
OS493_016855-T1
OS493_016856-T1
OS493_016857-T1
OS493_016858-T1
OS493_016859-T1
OS493_016860-T1
OS493_016861-T1
OS493_016862-T1
OS493_016863-T1
OS493_016864-T1
OS493_016865-T1
OS493_016867-T1
OS493_016868-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
OS493_016869-T1
OS493_016870-T1
OS493_016871-T1
OS493_016872-T1ANTIGEN BSP, PUTATIVE-RELATED
OS493_016873-T1
OS493_016874-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
OS493_016875-T1
OS493_016876-T1ANTIGEN BSP, PUTATIVE-RELATED
OS493_016877-T1
OS493_016878-T1
OS493_016879-T1
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