Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_016768-T1 | |
OS493_016769-T1 | |
OS493_016770-T1 | |
OS493_016771-T1 | MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED |
OS493_016772-T1 | MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED |
OS493_016774-T1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
OS493_016775-T1 | FRIZZLED |
OS493_016777-T1 | |
OS493_016778-T1 | |
OS493_016779-T1 | ALSIN HOMOLOG |
OS493_016780-T1 | ALSIN HOMOLOG |
OS493_016781-T1 | REGULATOR OF CHROMOSOME CONDENSATION |
OS493_016782-T1 | |
OS493_016784-T1 | GUANYLATE KINASE-RELATED |
OS493_016785-T1 | UNCHARACTERIZED |
OS493_016786-T1 | |
OS493_016787-T1 | 8-OXOGUANINE DNA GLYCOSYLASE |
OS493_016788-T1 | BAX INHIBITOR-RELATED |
OS493_016789-T1 | |
OS493_016790-T1 | LUPUS LA PROTEIN-RELATED |
OS493_016791-T1 | |
OS493_016792-T1 | NUCLEOSIDE DIPHOSPHATE KINASE |
OS493_016793-T1 | |
OS493_016794-T1 | NME/NM23 FAMILY MEMBER 8 |
OS493_016795-T1 | |
OS493_016796-T1 | |
OS493_016797-T1 | |
OS493_016798-T1 | |
OS493_016800-T1 | |
OS493_016801-T1 | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY |
OS493_016802-T1 | RHO GTPASE ACTIVATING PROTEIN 11A |
OS493_016803-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
OS493_016804-T1 | |
OS493_016805-T1 | |
OS493_016806-T1 | FUMARYLACETOACETASE |
OS493_016807-T1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
OS493_016808-T1 | |
OS493_016809-T1 | TYROSINE-PROTEIN PHOSPHATASE |
OS493_016810-T1 | |
OS493_016811-T1 | |
OS493_016812-T1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
OS493_016813-T1 | COLLAGEN ALPHA |
OS493_016814-T1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
OS493_016817-T1 | DIHYDROOROTASE-RELATED |
OS493_016818-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_016819-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_016820-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_016821-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_016822-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_016823-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |