About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016768-T1
OS493_016769-T1
OS493_016770-T1
OS493_016771-T1MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
OS493_016772-T1MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
OS493_016774-T1HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED
OS493_016775-T1FRIZZLED
OS493_016777-T1
OS493_016778-T1
OS493_016779-T1ALSIN HOMOLOG
OS493_016780-T1ALSIN HOMOLOG
OS493_016781-T1REGULATOR OF CHROMOSOME CONDENSATION
OS493_016782-T1
OS493_016784-T1GUANYLATE KINASE-RELATED
OS493_016785-T1UNCHARACTERIZED
OS493_016786-T1
OS493_016787-T18-OXOGUANINE DNA GLYCOSYLASE
OS493_016788-T1BAX INHIBITOR-RELATED
OS493_016789-T1
OS493_016790-T1LUPUS LA PROTEIN-RELATED
OS493_016791-T1
OS493_016792-T1NUCLEOSIDE DIPHOSPHATE KINASE
OS493_016793-T1
OS493_016794-T1NME/NM23 FAMILY MEMBER 8
OS493_016795-T1
OS493_016796-T1
OS493_016797-T1
OS493_016798-T1
OS493_016800-T1
OS493_016801-T1ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY
OS493_016802-T1RHO GTPASE ACTIVATING PROTEIN 11A
OS493_016803-T1GUANINE NUCLEOTIDE EXCHANGE FACTOR
OS493_016804-T1
OS493_016805-T1
OS493_016806-T1FUMARYLACETOACETASE
OS493_016807-T1TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
OS493_016808-T1
OS493_016809-T1TYROSINE-PROTEIN PHOSPHATASE
OS493_016810-T1
OS493_016811-T1
OS493_016812-T1ABC TRANSPORTER G FAMILY MEMBER 28
OS493_016813-T1COLLAGEN ALPHA
OS493_016814-T1ABC TRANSPORTER G FAMILY MEMBER 28
OS493_016817-T1DIHYDROOROTASE-RELATED
OS493_016818-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_016819-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_016820-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_016821-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_016822-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_016823-T1SOLUTE CARRIER FAMILY 22 MEMBER
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