Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_016449-T1 | |
OS493_016450-T1 | |
OS493_016451-T1 | GLR0591 PROTEIN |
OS493_016452-T1 | GLR0591 PROTEIN |
OS493_016453-T1 | GLR0591 PROTEIN |
OS493_016454-T1 | GLR0591 PROTEIN |
OS493_016455-T1 | |
OS493_016456-T1 | GLR0591 PROTEIN |
OS493_016457-T1 | |
OS493_016459-T1 | GLR0591 PROTEIN |
OS493_016460-T1 | GLR0591 PROTEIN |
OS493_016461-T1 | GLR0591 PROTEIN |
OS493_016462-T1 | GLR0591 PROTEIN |
OS493_016463-T1 | GLR0591 PROTEIN |
OS493_016464-T1 | GLR0591 PROTEIN |
OS493_016465-T1 | GLR0591 PROTEIN |
OS493_016466-T1 | HOMEOBOX PROTEIN ORTHOPEDIA |
OS493_016467-T1 | HOMEOBOX PROTEIN ARISTALESS |
OS493_016468-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016469-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016470-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016471-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016473-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016474-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016475-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016476-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016477-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_016478-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_016479-T1 | THROMBOSPONDIN |
OS493_016480-T1 | JTB PROTEIN-RELATED |
OS493_016481-T1 | OXIDOREDUCTASE HTATIP2 |
OS493_016483-T1 | NUCLEAR HORMONE RECEPTOR |
OS493_016485-T1 | |
OS493_016486-T1 | LD44762P |
OS493_016487-T1 | APOSPORY-ASSOCIATED PROTEIN C-RELATED |
OS493_016488-T1 | UBIQUILIN |
OS493_016489-T1 | |
OS493_016490-T1 | |
OS493_016491-T1 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
OS493_016492-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
OS493_016493-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 15 |
OS493_016494-T1 | SURVIVAL MOTOR NEURON-LIKE PROTEIN 1 |
OS493_016495-T1 | SURVIVAL MOTOR NEURON-LIKE PROTEIN 1 |
OS493_016496-T1 | PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED |
OS493_016497-T1 | DNA-DIRECTED RNA POLYMERASE III |
OS493_016498-T1 | COLLAGEN ALPHA |
OS493_016499-T1 | SPINAL CORD EXPRESSION PROTEIN 4 |
OS493_016500-T1 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44 |
OS493_016501-T1 | RNA LARIAT DEBRANCHING ENZYME |
OS493_016502-T1 | RNA-BINDING PROTEIN 8A |