Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_016233-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
OS493_016234-T1 | |
OS493_016235-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
OS493_016236-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
OS493_016237-T1 | APG9 AUTOPHAGY 9 |
OS493_016238-T1 | |
OS493_016239-T1 | |
OS493_016240-T1 | TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 4 |
OS493_016241-T1 | TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 4 |
OS493_016242-T1 | |
OS493_016243-T1 | PIKACHURIN-LIKE PROTEIN |
OS493_016245-T1 | |
OS493_016246-T1 | PIKACHURIN-LIKE PROTEIN |
OS493_016247-T1 | |
OS493_016248-T1 | APG9 AUTOPHAGY 9 |
OS493_016250-T1 | |
OS493_016251-T1 | |
OS493_016252-T1 | |
OS493_016253-T1 | |
OS493_016254-T1 | MCG113260-RELATED-RELATED |
OS493_016255-T1 | CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL |
OS493_016256-T1 | CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL |
OS493_016257-T1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
OS493_016258-T1 | CELL DIVISION PROTEIN KINASE |
OS493_016259-T1 | PROTEIN YAE1 HOMOLOG |
OS493_016260-T1 | LANC-LIKE PROTEIN |
OS493_016261-T1 | GROWTH FACTOR RECEPTOR-BOUND PROTEIN |
OS493_016262-T1 | NUCLEAR TRANSPORT FACTOR 2 |
OS493_016263-T1 | NUCLEAR TRANSPORT FACTOR 2 |
OS493_016264-T1 | |
OS493_016265-T1 | |
OS493_016266-T1 | |
OS493_016267-T1 | PX DOMAIN-CONTAINING PROTEIN |
OS493_016268-T1 | PX DOMAIN-CONTAINING PROTEIN |
OS493_016269-T1 | |
OS493_016270-T1 | ALTERNATIVE OXIDASE |
OS493_016271-T1 | METHIONINE AMINOPEPTIDASE |
OS493_016272-T1 | CCAAT/ENHANCER BINDING PROTEIN |
OS493_016273-T1 | ALTERNATIVE OXIDASE |
OS493_016274-T1 | ALTERNATIVE OXIDASE |
OS493_016275-T1 | METHIONINE SULFOXIDE REDUCTASE |
OS493_016276-T1 | GLUTAMINE SYNTHETASE |
OS493_016277-T1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA |
OS493_016278-T1 | PROTEASOME REGULATOR PA28 |
OS493_016280-T1 | FAS APOPTOTIC INHIBITORY MOLECULE FAIM |
OS493_016281-T1 | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED |
OS493_016282-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_016283-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_016284-T1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
OS493_016285-T1 | COLLAGEN ALPHA |