Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015961-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_015962-T1 | COLLAGEN ALPHA |
OS493_015963-T1 | COLLAGEN ALPHA |
OS493_015964-T1 | |
OS493_015965-T1 | COLLAGEN ALPHA |
OS493_015966-T1 | |
OS493_015967-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_015968-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_015969-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_015970-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_015971-T1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA |
OS493_015972-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_015973-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_015974-T1 | UNC-93 RELATED |
OS493_015975-T1 | |
OS493_015976-T1 | SH3 MULTIPLE DOMAIN |
OS493_015977-T1 | SH3 MULTIPLE DOMAIN |
OS493_015978-T1 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM |
OS493_015979-T1 | GUANYLYL CYCLASE DOMAIN CONTAINING PROTEIN 1 GUCD1 |
OS493_015980-T1 | MALATE SYNTHASE |
OS493_015981-T1 | ISOCITRATE LYASE/MALATE SYNTHASE |
OS493_015982-T1 | YDJC DEACETYLASE FAMILY MEMBER |
OS493_015983-T1 | YDJC DEACETYLASE FAMILY MEMBER |
OS493_015984-T1 | GPI TRANSAMIDASE COMPONENT PIG-S |
OS493_015985-T1 | |
OS493_015986-T1 | APOPTOSIS-INDUCING FACTOR 1 |
OS493_015987-T1 | OBG GTPASE FAMILY |
OS493_015988-T1 | BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE |
OS493_015989-T1 | |
OS493_015990-T1 | RNA-BINDING MOTIF PROTEIN 14B |
OS493_015991-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G |
OS493_015992-T1 | LIM/HOMEOBOX PROTEIN LHX |
OS493_015993-T1 | |
OS493_015994-T1 | |
OS493_015995-T1 | ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2 |
OS493_015997-T1 | CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN |
OS493_015998-T1 | |
OS493_015999-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 157 |
OS493_016000-T1 | 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 |
OS493_016001-T1 | CHOLOYLGLYCINE HYDROLASE |
OS493_016002-T1 | CHOLOYLGLYCINE HYDROLASE |
OS493_016003-T1 | SERINE PROTEASE |
OS493_016004-T1 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 |
OS493_016005-T1 | LEUCINE RICH REPEAT FAMILY PROTEIN |
OS493_016006-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12 |
OS493_016007-T1 | UNCHARACTERIZED |
OS493_016008-T1 | GPI TRANSAMIDASE COMPONENT PIG-S |
OS493_016009-T1 | APOPTOSIS-INDUCING FACTOR 1 |
OS493_016010-T1 | APOPTOSIS-INDUCING FACTOR 1 |
OS493_016012-T1 | PROTEIN DISPATCHED-RELATED |