About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_006309-T1CASEIN KINASE-RELATED
OS493_006310-T1FOLATE RECEPTOR
OS493_006311-T1NOT56 - RELATED
OS493_006312-T1-
OS493_006313-T1DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED
OS493_006314-T1DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED
OS493_006315-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 11
OS493_006316-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 11
OS493_006317-T1-
OS493_006318-T1MULTIPLE PDZ DOMAIN PROTEIN
OS493_006319-T1RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT
OS493_006320-T1C3ORF6 PROTEIN-RELATED
OS493_006321-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_006322-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_006323-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_006324-T1CLEAVAGE STIMULATION FACTOR SUBUNIT 1
OS493_006325-T1CYTOCHROME P450 FAMILY 4
OS493_006326-T1-
OS493_006327-T1EQUILIBRATIVE NUCLEOSIDE TRANSPORTER
OS493_006328-T1EQUILIBRATIVE NUCLEOSIDE TRANSPORTER
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