About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016013-T1PROTEIN DISPATCHED-RELATED
OS493_016014-T1PROTEIN DISPATCHED-RELATED
OS493_016015-T1PROTEIN DISPATCHED-RELATED
OS493_016016-T1
OS493_016017-T1PHOSPHATIDYLINOSITOL SYNTHASE
OS493_016018-T1ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
OS493_016019-T1
OS493_016020-T1
OS493_016021-T1
OS493_016023-T1
OS493_016024-T1
OS493_016025-T1
OS493_016026-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_016027-T1
OS493_016028-T1
OS493_016029-T1RADIAL SPOKE HEAD 1 HOMOLOG
OS493_016030-T1
OS493_016031-T1ACTIVATOR OF S-PHASE KINASE-RELATED
OS493_016032-T1
OS493_016033-T1PDF RECEPTOR-LIKE PROTEIN-RELATED
OS493_016034-T1PDF RECEPTOR-LIKE PROTEIN-RELATED
OS493_016035-T1
OS493_016036-T139S RIBOSOMAL PROTEIN L43
OS493_016037-T1
OS493_016038-T1HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE
OS493_016039-T1PROTEIN DISULFIDE ISOMERASE
OS493_016041-T1EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C
OS493_016042-T1RIBULOSE-5-PHOSPHATE-3-EPIMERASE
OS493_016043-T1
OS493_016044-T1
OS493_016045-T1
OS493_016046-T1
OS493_016047-T1
OS493_016048-T1DOWNSTREAM NEIGHBOR OF SON
OS493_016049-T1DOWNSTREAM NEIGHBOR OF SON
OS493_016050-T1MUTATED IN BLADDER CANCER 1
OS493_016051-T1
OS493_016052-T1
OS493_016053-T1
OS493_016054-T1
OS493_016055-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_016056-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_016057-T1
OS493_016058-T1
OS493_016059-T1SENTRIN/SUMO-SPECIFIC PROTEASE
OS493_016060-T1PARTITIONING DEFECTIVE 3 RELATED
OS493_016061-T1H2.0-LIKE HOMEOBOX PROTEIN
OS493_016062-T1H2.0-LIKE HOMEOBOX PROTEIN
OS493_016063-T1KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED
OS493_016064-T1STRIATED MUSCLE ACTIVATOR OF RHO-DEPENDENT SIGNALING-RELATED
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