Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_016013-T1 | PROTEIN DISPATCHED-RELATED |
OS493_016014-T1 | PROTEIN DISPATCHED-RELATED |
OS493_016015-T1 | PROTEIN DISPATCHED-RELATED |
OS493_016016-T1 | |
OS493_016017-T1 | PHOSPHATIDYLINOSITOL SYNTHASE |
OS493_016018-T1 | ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE |
OS493_016019-T1 | |
OS493_016020-T1 | |
OS493_016021-T1 | |
OS493_016023-T1 | |
OS493_016024-T1 | |
OS493_016025-T1 | |
OS493_016026-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_016027-T1 | |
OS493_016028-T1 | |
OS493_016029-T1 | RADIAL SPOKE HEAD 1 HOMOLOG |
OS493_016030-T1 | |
OS493_016031-T1 | ACTIVATOR OF S-PHASE KINASE-RELATED |
OS493_016032-T1 | |
OS493_016033-T1 | PDF RECEPTOR-LIKE PROTEIN-RELATED |
OS493_016034-T1 | PDF RECEPTOR-LIKE PROTEIN-RELATED |
OS493_016035-T1 | |
OS493_016036-T1 | 39S RIBOSOMAL PROTEIN L43 |
OS493_016037-T1 | |
OS493_016038-T1 | HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE |
OS493_016039-T1 | PROTEIN DISULFIDE ISOMERASE |
OS493_016041-T1 | EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C |
OS493_016042-T1 | RIBULOSE-5-PHOSPHATE-3-EPIMERASE |
OS493_016043-T1 | |
OS493_016044-T1 | |
OS493_016045-T1 | |
OS493_016046-T1 | |
OS493_016047-T1 | |
OS493_016048-T1 | DOWNSTREAM NEIGHBOR OF SON |
OS493_016049-T1 | DOWNSTREAM NEIGHBOR OF SON |
OS493_016050-T1 | MUTATED IN BLADDER CANCER 1 |
OS493_016051-T1 | |
OS493_016052-T1 | |
OS493_016053-T1 | |
OS493_016054-T1 | |
OS493_016055-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_016056-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_016057-T1 | |
OS493_016058-T1 | |
OS493_016059-T1 | SENTRIN/SUMO-SPECIFIC PROTEASE |
OS493_016060-T1 | PARTITIONING DEFECTIVE 3 RELATED |
OS493_016061-T1 | H2.0-LIKE HOMEOBOX PROTEIN |
OS493_016062-T1 | H2.0-LIKE HOMEOBOX PROTEIN |
OS493_016063-T1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
OS493_016064-T1 | STRIATED MUSCLE ACTIVATOR OF RHO-DEPENDENT SIGNALING-RELATED |