Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_016168-T1 | 3-5 EXONUCLEASE |
OS493_016169-T1 | RIBOSOMAL PROTEIN S15P/S13E |
OS493_016170-T1 | SORTING NEXIN-4 |
OS493_016171-T1 | AMPHIPHYSIN |
OS493_016172-T1 | RHO FAMILY GTPASE |
OS493_016173-T1 | RHO FAMILY GTPASE |
OS493_016174-T1 | THIAMIN PYROPHOSPHOKINASE |
OS493_016175-T1 | PROTEIN ZERKNUELLT 1-RELATED |
OS493_016176-T1 | SEGMENTATION PROTEIN EVEN-SKIPPED |
OS493_016178-T1 | PROTEIN ZERKNUELLT 1-RELATED |
OS493_016184-T1 | PROTEIN ZERKNUELLT 1-RELATED |
OS493_016185-T1 | |
OS493_016186-T1 | PROTEIN ZERKNUELLT 1-RELATED |
OS493_016187-T1 | PIKACHURIN-LIKE PROTEIN |
OS493_016188-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_016189-T1 | |
OS493_016190-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_016191-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_016192-T1 | |
OS493_016193-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_016194-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_016195-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_016196-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_016197-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_016198-T1 | |
OS493_016199-T1 | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN |
OS493_016200-T1 | SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE |
OS493_016201-T1 | SORTING NEXIN-4 |
OS493_016202-T1 | |
OS493_016203-T1 | RETICULOPHAGY REGULATOR 3 |
OS493_016204-T1 | TBP-1 INTERACTING PROTEIN |
OS493_016205-T1 | SUCCINATE/FUMARATE MITOCHONDRIAL TRANSPORTER-RELATED |
OS493_016206-T1 | TUBULIN |
OS493_016208-T1 | 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1 |
OS493_016209-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 9 |
OS493_016210-T1 | |
OS493_016211-T1 | |
OS493_016212-T1 | GATOR COMPLEX PROTEIN WDR24 |
OS493_016213-T1 | GATOR COMPLEX PROTEIN WDR24 |
OS493_016214-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
OS493_016218-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
OS493_016221-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_016222-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_016223-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_016227-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
OS493_016228-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
OS493_016229-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
OS493_016230-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
OS493_016231-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
OS493_016232-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |