About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016168-T13-5 EXONUCLEASE
OS493_016169-T1RIBOSOMAL PROTEIN S15P/S13E
OS493_016170-T1SORTING NEXIN-4
OS493_016171-T1AMPHIPHYSIN
OS493_016172-T1RHO FAMILY GTPASE
OS493_016173-T1RHO FAMILY GTPASE
OS493_016174-T1THIAMIN PYROPHOSPHOKINASE
OS493_016175-T1PROTEIN ZERKNUELLT 1-RELATED
OS493_016176-T1SEGMENTATION PROTEIN EVEN-SKIPPED
OS493_016178-T1PROTEIN ZERKNUELLT 1-RELATED
OS493_016184-T1PROTEIN ZERKNUELLT 1-RELATED
OS493_016185-T1
OS493_016186-T1PROTEIN ZERKNUELLT 1-RELATED
OS493_016187-T1PIKACHURIN-LIKE PROTEIN
OS493_016188-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_016189-T1
OS493_016190-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_016191-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_016192-T1
OS493_016193-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_016194-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_016195-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_016196-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_016197-T1SOLUTE CARRIER FAMILY 22 MEMBER
OS493_016198-T1
OS493_016199-T1RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
OS493_016200-T1SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE
OS493_016201-T1SORTING NEXIN-4
OS493_016202-T1
OS493_016203-T1RETICULOPHAGY REGULATOR 3
OS493_016204-T1TBP-1 INTERACTING PROTEIN
OS493_016205-T1SUCCINATE/FUMARATE MITOCHONDRIAL TRANSPORTER-RELATED
OS493_016206-T1TUBULIN
OS493_016208-T13'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1
OS493_016209-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 9
OS493_016210-T1
OS493_016211-T1
OS493_016212-T1GATOR COMPLEX PROTEIN WDR24
OS493_016213-T1GATOR COMPLEX PROTEIN WDR24
OS493_016214-T1COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
OS493_016218-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_016221-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_016222-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_016223-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_016227-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_016228-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_016229-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_016230-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_016231-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_016232-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
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