Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_016117-T1 | |
OS493_016118-T1 | |
OS493_016119-T1 | |
OS493_016121-T1 | |
OS493_016122-T1 | |
OS493_016123-T1 | POLYKETIDE SYNTHASE-RELATED |
OS493_016124-T1 | HOMEOBOX PROTEIN |
OS493_016125-T1 | |
OS493_016126-T1 | SOLUTE CARRIER FAMILY 39 |
OS493_016127-T1 | EAP30 SUBUNIT OF ELL COMPLEX |
OS493_016128-T1 | SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN |
OS493_016129-T1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
OS493_016130-T1 | VACUOLAR PROTEIN SORTING VPS41 |
OS493_016131-T1 | ENHANCER OF POLYCOMB |
OS493_016132-T1 | |
OS493_016133-T1 | |
OS493_016134-T1 | METHYL-CPG BINDING PROTEIN, DROSOPHILA |
OS493_016135-T1 | |
OS493_016136-T1 | METHYL-CPG BINDING PROTEIN, DROSOPHILA |
OS493_016137-T1 | ALPHA- 1,6 -FUCOSYLTRANSFERASE |
OS493_016138-T1 | ALPHA- 1,6 -FUCOSYLTRANSFERASE |
OS493_016139-T1 | ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED |
OS493_016140-T1 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED |
OS493_016141-T1 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED |
OS493_016142-T1 | |
OS493_016143-T1 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED |
OS493_016144-T1 | |
OS493_016145-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
OS493_016146-T1 | PREFOLDIN SUBUNIT 5 |
OS493_016147-T1 | |
OS493_016148-T1 | LIPOXYGENASE |
OS493_016149-T1 | TRANSMEMBRANE PROTEIN 106B |
OS493_016150-T1 | 50S/60S RIBOSOMAL PROTEIN L16 |
OS493_016151-T1 | |
OS493_016152-T1 | |
OS493_016153-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_016154-T1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
OS493_016155-T1 | |
OS493_016156-T1 | SEC61 GAMMA SUBUNIT |
OS493_016157-T1 | COLLAGEN ALPHA |
OS493_016158-T1 | |
OS493_016159-T1 | |
OS493_016160-T1 | |
OS493_016161-T1 | |
OS493_016162-T1 | |
OS493_016163-T1 | |
OS493_016164-T1 | ASPARTYL-TRNA SYNTHETASE |
OS493_016165-T1 | |
OS493_016166-T1 | PROTEASOME SUBUNIT ALPHA/BETA |
OS493_016167-T1 |