Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015801-T1 | DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN |
OS493_015802-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
OS493_015803-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
OS493_015804-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_015807-T1 | SERINE-THREONINE PROTEIN KINASE |
OS493_015809-T1 | |
OS493_015810-T1 | |
OS493_015811-T1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
OS493_015812-T1 | MYOINOSITOL OXYGENASE |
OS493_015813-T1 | |
OS493_015815-T1 | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED |
OS493_015816-T1 | SERINE/THREONINE KINASE |
OS493_015817-T1 | - |
OS493_015818-T1 | |
OS493_015819-T1 | PIKACHURIN-LIKE PROTEIN |
OS493_015820-T1 | SER/THR-RICH PROTEIN T10 IN DGCR REGION |
OS493_015821-T1 | RAB GTPASE-BINDING EFFECTOR PROTEIN |
OS493_015822-T1 | RAB GTPASE-BINDING EFFECTOR PROTEIN |
OS493_015823-T1 | |
OS493_015824-T1 | |
OS493_015826-T1 | |
OS493_015827-T1 | NETRIN/LAMININ-RELATED |
OS493_015828-T1 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
OS493_015829-T1 | |
OS493_015830-T1 | NETRIN/LAMININ-RELATED |
OS493_015831-T1 | NETRIN/LAMININ-RELATED |
OS493_015832-T1 | NETRIN/LAMININ-RELATED |
OS493_015833-T1 | NETRIN/LAMININ-RELATED |
OS493_015834-T1 | NETRIN/LAMININ-RELATED |
OS493_015835-T1 | PIKACHURIN-LIKE PROTEIN |
OS493_015836-T1 | PIKACHURIN-LIKE PROTEIN |
OS493_015837-T1 | MITOGEN-ACTIVATED PROTEIN KINASE |
OS493_015838-T1 | ADDUCIN |
OS493_015839-T1 | STATHMIN |
OS493_015841-T1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
OS493_015842-T1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
OS493_015843-T1 | |
OS493_015845-T1 | 40S RIBOSOMAL PROTEIN S21 |
OS493_015847-T1 | |
OS493_015848-T1 | HISTONE ACETYLTRANSFERASE-RELATED |
OS493_015849-T1 | |
OS493_015850-T1 | RETICULOCALBIN |
OS493_015851-T1 | HISTONE DEACETYLASE HDAC1-RELATED |
OS493_015852-T1 | RING FINGER PROTEIN 127 |
OS493_015853-T1 | UDP-GLUCOSE 4-EPIMERASE |
OS493_015854-T1 | MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER |
OS493_015855-T1 | METALLO PHOSPHOESTERASE RELATED |
OS493_015856-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_015857-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_015858-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |