About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015801-T1DISKS LARGE-ASSOCIATED PROTEIN DAP SAP90/PSD-95-ASSOCIATED PROTEIN
OS493_015802-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
OS493_015803-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
OS493_015804-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_015807-T1SERINE-THREONINE PROTEIN KINASE
OS493_015809-T1
OS493_015810-T1
OS493_015811-T1ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
OS493_015812-T1MYOINOSITOL OXYGENASE
OS493_015813-T1
OS493_015815-T1CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED
OS493_015816-T1SERINE/THREONINE KINASE
OS493_015817-T1-
OS493_015818-T1
OS493_015819-T1PIKACHURIN-LIKE PROTEIN
OS493_015820-T1SER/THR-RICH PROTEIN T10 IN DGCR REGION
OS493_015821-T1RAB GTPASE-BINDING EFFECTOR PROTEIN
OS493_015822-T1RAB GTPASE-BINDING EFFECTOR PROTEIN
OS493_015823-T1
OS493_015824-T1
OS493_015826-T1
OS493_015827-T1NETRIN/LAMININ-RELATED
OS493_015828-T1THREE PRIME REPAIR EXONUCLEASE 1, 2
OS493_015829-T1
OS493_015830-T1NETRIN/LAMININ-RELATED
OS493_015831-T1NETRIN/LAMININ-RELATED
OS493_015832-T1NETRIN/LAMININ-RELATED
OS493_015833-T1NETRIN/LAMININ-RELATED
OS493_015834-T1NETRIN/LAMININ-RELATED
OS493_015835-T1PIKACHURIN-LIKE PROTEIN
OS493_015836-T1PIKACHURIN-LIKE PROTEIN
OS493_015837-T1MITOGEN-ACTIVATED PROTEIN KINASE
OS493_015838-T1ADDUCIN
OS493_015839-T1STATHMIN
OS493_015841-T1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
OS493_015842-T1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
OS493_015843-T1
OS493_015845-T140S RIBOSOMAL PROTEIN S21
OS493_015847-T1
OS493_015848-T1HISTONE ACETYLTRANSFERASE-RELATED
OS493_015849-T1
OS493_015850-T1RETICULOCALBIN
OS493_015851-T1HISTONE DEACETYLASE HDAC1-RELATED
OS493_015852-T1RING FINGER PROTEIN 127
OS493_015853-T1UDP-GLUCOSE 4-EPIMERASE
OS493_015854-T1MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
OS493_015855-T1METALLO PHOSPHOESTERASE RELATED
OS493_015856-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_015857-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_015858-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
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