Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_015478-T1 | GLUTATHIONE PEROXIDASE |
OS493_015479-T1 | ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6 |
OS493_015480-T1 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 |
OS493_015481-T1 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 |
OS493_015482-T1 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
OS493_015485-T1 | |
OS493_015486-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_015487-T1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_015488-T1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
OS493_015489-T1 | |
OS493_015490-T1 | |
OS493_015491-T1 | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED |
OS493_015492-T1 | |
OS493_015493-T1 | PROTEIN SIDEKICK |
OS493_015494-T1 | |
OS493_015495-T1 | |
OS493_015496-T1 | PROTEIN SIDEKICK |
OS493_015497-T1 | |
OS493_015499-T1 | |
OS493_015500-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_015501-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
OS493_015503-T1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
OS493_015504-T1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
OS493_015505-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_015506-T1 | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT |
OS493_015507-T1 | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT |
OS493_015508-T1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
OS493_015509-T1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
OS493_015511-T1 | |
OS493_015512-T1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
OS493_015515-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_015516-T1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
OS493_015517-T1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
OS493_015518-T1 | SUGAR NUCLEOTIDE EPIMERASE RELATED |
OS493_015519-T1 | RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN |
OS493_015521-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_015522-T1 | INTELECTIN |
OS493_015523-T1 | |
OS493_015524-T1 | PROGRAMMED CELL DEATH PROTEIN 5 |
OS493_015525-T1 | |
OS493_015526-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_015527-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_015528-T1 | CENTROSOMAL PROTEIN OF 89 KDA |
OS493_015529-T1 | SER/THR PROTEIN KINASE ULK4 |
OS493_015530-T1 | RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3 |
OS493_015531-T1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
OS493_015532-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_015533-T1 | UNCHARACTERIZED |
OS493_015534-T1 | 28S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL |
OS493_015535-T1 | COPINE |