About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015478-T1GLUTATHIONE PEROXIDASE
OS493_015479-T1ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6
OS493_015480-T1DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1
OS493_015481-T1DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1
OS493_015482-T1HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED
OS493_015485-T1
OS493_015486-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_015487-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
OS493_015488-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
OS493_015489-T1
OS493_015490-T1
OS493_015491-T1PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED
OS493_015492-T1
OS493_015493-T1PROTEIN SIDEKICK
OS493_015494-T1
OS493_015495-T1
OS493_015496-T1PROTEIN SIDEKICK
OS493_015497-T1
OS493_015499-T1
OS493_015500-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_015501-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS
OS493_015503-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_015504-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_015505-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_015506-T1GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT
OS493_015507-T1GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT
OS493_015508-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_015509-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_015511-T1
OS493_015512-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_015515-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_015516-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_015517-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_015518-T1SUGAR NUCLEOTIDE EPIMERASE RELATED
OS493_015519-T1RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN
OS493_015521-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_015522-T1INTELECTIN
OS493_015523-T1
OS493_015524-T1PROGRAMMED CELL DEATH PROTEIN 5
OS493_015525-T1
OS493_015526-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_015527-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_015528-T1CENTROSOMAL PROTEIN OF 89 KDA
OS493_015529-T1SER/THR PROTEIN KINASE ULK4
OS493_015530-T1RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3
OS493_015531-T1WD REPEAT CONTAINING PROTEIN 3 WDR3
OS493_015532-T1LEUCOKININ RECEPTOR-RELATED
OS493_015533-T1UNCHARACTERIZED
OS493_015534-T128S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL
OS493_015535-T1COPINE
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