About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_015248-T1MONOCARBOXYLATE TRANSPORTER
OS493_015249-T1MONOCARBOXYLATE TRANSPORTER
OS493_015250-T1MONOCARBOXYLATE TRANSPORTER
OS493_015251-T1MONOCARBOXYLATE TRANSPORTER
OS493_015252-T1
OS493_015253-T1OVOCHYMASE-RELATED
OS493_015254-T1METHYLTRANSFERASE
OS493_015255-T1
OS493_015256-T1
OS493_015257-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_015258-T1PATCHED-RELATED
OS493_015259-T1PATCHED-RELATED
OS493_015260-T1
OS493_015261-T1
OS493_015262-T1CADHERIN-LIKE AND PC-ESTERASE DOMAIN-CONTAINING PROTEIN 1
OS493_015263-T1
OS493_015264-T1SERINE-THREONINE PROTEIN KINASE
OS493_015265-T1
OS493_015266-T1NUDIX T16 FAMILY MEMBER
OS493_015267-T1WNT RELATED
OS493_015269-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_015270-T1
OS493_015271-T1
OS493_015272-T1
OS493_015273-T1ABC TRANSPORTER B FAMILY
OS493_015274-T1
OS493_015275-T1
OS493_015276-T1
OS493_015277-T1
OS493_015278-T1
OS493_015279-T1
OS493_015282-T1
OS493_015285-T1
OS493_015286-T1AMINO ACID TRANSPORTER
OS493_015287-T1
OS493_015288-T1
OS493_015290-T1AMINO ACID TRANSPORTER
OS493_015291-T1AMINO ACID TRANSPORTER
OS493_015292-T1T CELL-SPECIFIC ADAPTER PROTEIN TSAD
OS493_015294-T1CELL DIVISION PROTEIN KINASE
OS493_015295-T1
OS493_015296-T1
OS493_015297-T1
OS493_015298-T1SPERMATHECAL PHYSIOLOGY VARIANT
OS493_015299-T1
OS493_015300-T1SPERMATHECAL PHYSIOLOGY VARIANT
OS493_015301-T1ABC TRANSPORTER B FAMILY
OS493_015302-T1ABC TRANSPORTER B FAMILY
OS493_015303-T1G-PROTEIN COUPLED RECEPTOR
OS493_015305-T1ADHESION G-PROTEIN COUPLED RECEPTOR
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